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LONRF1 (LON peptidase N-terminal domain and ring finger 1)

Identity

Alias_symbol (synonym)FLJ23749
RNF191
Other alias
HGNC (Hugo) LONRF1
LocusID (NCBI) 91694
Atlas_Id 68552
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 12721895 and ends at 12755442 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LONRF1 (8p23.1) / PSMB7 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LONRF1   26302
Cards
Entrez_Gene (NCBI)LONRF1  91694  LON peptidase N-terminal domain and ring finger 1
AliasesRNF191
GeneCards (Weizmann)LONRF1
Ensembl hg19 (Hinxton)ENSG00000154359 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154359 [Gene_View]  chr8:12721895-12755442 [Contig_View]  LONRF1 [Vega]
ICGC DataPortalENSG00000154359
TCGA cBioPortalLONRF1
AceView (NCBI)LONRF1
Genatlas (Paris)LONRF1
WikiGenes91694
SOURCE (Princeton)LONRF1
Genetics Home Reference (NIH)LONRF1
Genomic and cartography
GoldenPath hg38 (UCSC)LONRF1  -     chr8:12721895-12755442 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LONRF1  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblLONRF1 - 8p23.1 [CytoView hg19]  LONRF1 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBILONRF1 [Mapview hg19]  LONRF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA017498 AA284268 AA732160 AI004802 AK074329
RefSeq transcript (Entrez)NM_001329976 NM_152271
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LONRF1
Cluster EST : UnigeneHs.180178 [ NCBI ]
CGAP (NCI)Hs.180178
Alternative Splicing GalleryENSG00000154359
Gene ExpressionLONRF1 [ NCBI-GEO ]   LONRF1 [ EBI - ARRAY_EXPRESS ]   LONRF1 [ SEEK ]   LONRF1 [ MEM ]
Gene Expression Viewer (FireBrowse)LONRF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91694
GTEX Portal (Tissue expression)LONRF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RB8
Splice isoforms : SwissVarQ17RB8
PhosPhoSitePlusQ17RB8
Domaine pattern : Prosite (Expaxy)LON_N (PS51787)    TPR_REGION (PS50293)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)LON_substr-bd_dom    PUA-like_domain    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat    Znf-RING_LisH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)LON_substr_bdg (PF02190)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam02190    pfam13445   
Domain families : Smart (EMBL)LON (SM00464)  RING (SM00184)  TPR (SM00028)  
Conserved Domain (NCBI)LONRF1
DMDM Disease mutations91694
Blocks (Seattle)LONRF1
SuperfamilyQ17RB8
Human Protein AtlasENSG00000154359
Peptide AtlasQ17RB8
HPRD08674
IPIIPI00291662   IPI00872653   IPI00985147   IPI00975724   IPI00976260   
Protein Interaction databases
DIP (DOE-UCLA)Q17RB8
IntAct (EBI)Q17RB8
FunCoupENSG00000154359
BioGRIDLONRF1
STRING (EMBL)LONRF1
ZODIACLONRF1
Ontologies - Pathways
QuickGOQ17RB8
Ontology : AmiGOprotein polyubiquitination  protein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  intracellular  cytosol  zinc ion binding  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  protein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  intracellular  cytosol  zinc ion binding  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkLONRF1
Atlas of Cancer Signalling NetworkLONRF1
Wikipedia pathwaysLONRF1
Orthology - Evolution
OrthoDB91694
GeneTree (enSembl)ENSG00000154359
Phylogenetic Trees/Animal Genes : TreeFamLONRF1
HOVERGENQ17RB8
HOGENOMQ17RB8
Homologs : HomoloGeneLONRF1
Homology/Alignments : Family Browser (UCSC)LONRF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLONRF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LONRF1
dbVarLONRF1
ClinVarLONRF1
1000_GenomesLONRF1 
Exome Variant ServerLONRF1
ExAC (Exome Aggregation Consortium)LONRF1 (select the gene name)
Genetic variants : HAPMAP91694
Genomic Variants (DGV)LONRF1 [DGVbeta]
DECIPHERLONRF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLONRF1 
Mutations
ICGC Data PortalLONRF1 
TCGA Data PortalLONRF1 
Broad Tumor PortalLONRF1
OASIS PortalLONRF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLONRF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLONRF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LONRF1
DgiDB (Drug Gene Interaction Database)LONRF1
DoCM (Curated mutations)LONRF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LONRF1 (select a term)
intoGenLONRF1
Cancer3DLONRF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLONRF1
Genetic Testing Registry LONRF1
NextProtQ17RB8 [Medical]
TSGene91694
GENETestsLONRF1
Target ValidationLONRF1
Huge Navigator LONRF1 [HugePedia]
snp3D : Map Gene to Disease91694
BioCentury BCIQLONRF1
ClinGenLONRF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91694
Chemical/Pharm GKB GenePA128394743
Clinical trialLONRF1
Miscellaneous
canSAR (ICR)LONRF1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLONRF1
EVEXLONRF1
GoPubMedLONRF1
iHOPLONRF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:37 CEST 2017

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