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LONRF2 (LON peptidase N-terminal domain and ring finger 2)

Identity

Alias_symbol (synonym)FLJ45273
RNF192
Other alias
HGNC (Hugo) LONRF2
LocusID (NCBI) 164832
Atlas_Id 68553
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 100273291 and ends at 100322733 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LONRF2 (2q11.2) / CLU (8p21.1)LONRF2 (2q11.2) / USMG5 (10q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LONRF2   24788
Cards
Entrez_Gene (NCBI)LONRF2  164832  LON peptidase N-terminal domain and ring finger 2
AliasesRNF192
GeneCards (Weizmann)LONRF2
Ensembl hg19 (Hinxton)ENSG00000170500 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170500 [Gene_View]  chr2:100273291-100322733 [Contig_View]  LONRF2 [Vega]
ICGC DataPortalENSG00000170500
TCGA cBioPortalLONRF2
AceView (NCBI)LONRF2
Genatlas (Paris)LONRF2
WikiGenes164832
SOURCE (Princeton)LONRF2
Genetics Home Reference (NIH)LONRF2
Genomic and cartography
GoldenPath hg38 (UCSC)LONRF2  -     chr2:100273291-100322733 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LONRF2  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblLONRF2 - 2q11.2 [CytoView hg19]  LONRF2 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBILONRF2 [Mapview hg19]  LONRF2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056373 AK094044 AK123836 AK124739 AK127206
RefSeq transcript (Entrez)NM_198461
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LONRF2
Cluster EST : UnigeneHs.21380 [ NCBI ]
CGAP (NCI)Hs.21380
Alternative Splicing GalleryENSG00000170500
Gene ExpressionLONRF2 [ NCBI-GEO ]   LONRF2 [ EBI - ARRAY_EXPRESS ]   LONRF2 [ SEEK ]   LONRF2 [ MEM ]
Gene Expression Viewer (FireBrowse)LONRF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164832
GTEX Portal (Tissue expression)LONRF2
Human Protein AtlasENSG00000170500-LONRF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1L5Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1L5Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1L5Z9
Splice isoforms : SwissVarQ1L5Z9
PhosPhoSitePlusQ1L5Z9
Domaine pattern : Prosite (Expaxy)LON_N (PS51787)    TPR_REGION (PS50293)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)LON_substr-bd_dom    PUA-like_domain    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat    Znf-RING_LisH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)LON_substr_bdg (PF02190)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam02190    pfam13445   
Domain families : Smart (EMBL)LON (SM00464)  RING (SM00184)  TPR (SM00028)  
Conserved Domain (NCBI)LONRF2
DMDM Disease mutations164832
Blocks (Seattle)LONRF2
SuperfamilyQ1L5Z9
Human Protein Atlas [tissue]ENSG00000170500-LONRF2 [tissue]
Peptide AtlasQ1L5Z9
HPRD13503
IPIIPI00827614   IPI00394812   
Protein Interaction databases
DIP (DOE-UCLA)Q1L5Z9
IntAct (EBI)Q1L5Z9
FunCoupENSG00000170500
BioGRIDLONRF2
STRING (EMBL)LONRF2
ZODIACLONRF2
Ontologies - Pathways
QuickGOQ1L5Z9
Ontology : AmiGOprotein polyubiquitination  intracellular  zinc ion binding  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  intracellular  zinc ion binding  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkLONRF2
Atlas of Cancer Signalling NetworkLONRF2
Wikipedia pathwaysLONRF2
Orthology - Evolution
OrthoDB164832
GeneTree (enSembl)ENSG00000170500
Phylogenetic Trees/Animal Genes : TreeFamLONRF2
HOVERGENQ1L5Z9
HOGENOMQ1L5Z9
Homologs : HomoloGeneLONRF2
Homology/Alignments : Family Browser (UCSC)LONRF2
Gene fusions - Rearrangements
Tumor Fusion PortalLONRF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLONRF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LONRF2
dbVarLONRF2
ClinVarLONRF2
1000_GenomesLONRF2 
Exome Variant ServerLONRF2
ExAC (Exome Aggregation Consortium)ENSG00000170500
GNOMAD BrowserENSG00000170500
Genetic variants : HAPMAP164832
Genomic Variants (DGV)LONRF2 [DGVbeta]
DECIPHERLONRF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLONRF2 
Mutations
ICGC Data PortalLONRF2 
TCGA Data PortalLONRF2 
Broad Tumor PortalLONRF2
OASIS PortalLONRF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLONRF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLONRF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LONRF2
DgiDB (Drug Gene Interaction Database)LONRF2
DoCM (Curated mutations)LONRF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LONRF2 (select a term)
intoGenLONRF2
Cancer3DLONRF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLONRF2
MedgenLONRF2
Genetic Testing Registry LONRF2
NextProtQ1L5Z9 [Medical]
TSGene164832
GENETestsLONRF2
Target ValidationLONRF2
Huge Navigator LONRF2 [HugePedia]
snp3D : Map Gene to Disease164832
BioCentury BCIQLONRF2
ClinGenLONRF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD164832
Chemical/Pharm GKB GenePA142671540
Clinical trialLONRF2
Miscellaneous
canSAR (ICR)LONRF2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLONRF2
EVEXLONRF2
GoPubMedLONRF2
iHOPLONRF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:21 CET 2017

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