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LONRF3 (LON peptidase N-terminal domain and ring finger 3)

Identity

Alias_namesRNF127
ring finger protein 127
Alias_symbol (synonym)FLJ22612
Other alias
HGNC (Hugo) LONRF3
LocusID (NCBI) 79836
Atlas_Id 46821
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 118974614 and ends at 119018355 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LONRF3   21152
Cards
Entrez_Gene (NCBI)LONRF3  79836  LON peptidase N-terminal domain and ring finger 3
AliasesRNF127
GeneCards (Weizmann)LONRF3
Ensembl hg19 (Hinxton)ENSG00000175556 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175556 [Gene_View]  chrX:118974614-119018355 [Contig_View]  LONRF3 [Vega]
ICGC DataPortalENSG00000175556
TCGA cBioPortalLONRF3
AceView (NCBI)LONRF3
Genatlas (Paris)LONRF3
WikiGenes79836
SOURCE (Princeton)LONRF3
Genetics Home Reference (NIH)LONRF3
Genomic and cartography
GoldenPath hg38 (UCSC)LONRF3  -     chrX:118974614-119018355 +  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LONRF3  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblLONRF3 - Xq24 [CytoView hg19]  LONRF3 - Xq24 [CytoView hg38]
Mapping of homologs : NCBILONRF3 [Mapview hg19]  LONRF3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026265 AK091777 AK097641 AK290198 BC098283
RefSeq transcript (Entrez)NM_001031855 NM_001289109 NM_024778
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LONRF3
Cluster EST : UnigeneHs.144266 [ NCBI ]
CGAP (NCI)Hs.144266
Alternative Splicing GalleryENSG00000175556
Gene ExpressionLONRF3 [ NCBI-GEO ]   LONRF3 [ EBI - ARRAY_EXPRESS ]   LONRF3 [ SEEK ]   LONRF3 [ MEM ]
Gene Expression Viewer (FireBrowse)LONRF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79836
GTEX Portal (Tissue expression)LONRF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ496Y0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ496Y0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ496Y0
Splice isoforms : SwissVarQ496Y0
PhosPhoSitePlusQ496Y0
Domaine pattern : Prosite (Expaxy)LON_N (PS51787)    TPR (PS50005)    TPR_REGION (PS50293)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)LON_substr-bd_dom    PUA-like_domain    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)LON_substr_bdg (PF02190)   
Domain families : Pfam (NCBI)pfam02190   
Domain families : Smart (EMBL)LON (SM00464)  RING (SM00184)  TPR (SM00028)  
Conserved Domain (NCBI)LONRF3
DMDM Disease mutations79836
Blocks (Seattle)LONRF3
SuperfamilyQ496Y0
Human Protein AtlasENSG00000175556
Peptide AtlasQ496Y0
HPRD06708
IPIIPI00300753   IPI00640460   IPI00827481   IPI00902452   IPI01012018   
Protein Interaction databases
DIP (DOE-UCLA)Q496Y0
IntAct (EBI)Q496Y0
FunCoupENSG00000175556
BioGRIDLONRF3
STRING (EMBL)LONRF3
ZODIACLONRF3
Ontologies - Pathways
QuickGOQ496Y0
Ontology : AmiGOprotein polyubiquitination  protein binding  intracellular  zinc ion binding  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  protein binding  intracellular  zinc ion binding  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkLONRF3
Atlas of Cancer Signalling NetworkLONRF3
Wikipedia pathwaysLONRF3
Orthology - Evolution
OrthoDB79836
GeneTree (enSembl)ENSG00000175556
Phylogenetic Trees/Animal Genes : TreeFamLONRF3
HOVERGENQ496Y0
HOGENOMQ496Y0
Homologs : HomoloGeneLONRF3
Homology/Alignments : Family Browser (UCSC)LONRF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLONRF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LONRF3
dbVarLONRF3
ClinVarLONRF3
1000_GenomesLONRF3 
Exome Variant ServerLONRF3
ExAC (Exome Aggregation Consortium)LONRF3 (select the gene name)
Genetic variants : HAPMAP79836
Genomic Variants (DGV)LONRF3 [DGVbeta]
DECIPHERLONRF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLONRF3 
Mutations
ICGC Data PortalLONRF3 
TCGA Data PortalLONRF3 
Broad Tumor PortalLONRF3
OASIS PortalLONRF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLONRF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLONRF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch LONRF3
DgiDB (Drug Gene Interaction Database)LONRF3
DoCM (Curated mutations)LONRF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LONRF3 (select a term)
intoGenLONRF3
Cancer3DLONRF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLONRF3
Genetic Testing Registry LONRF3
NextProtQ496Y0 [Medical]
TSGene79836
GENETestsLONRF3
Target ValidationLONRF3
Huge Navigator LONRF3 [HugePedia]
snp3D : Map Gene to Disease79836
BioCentury BCIQLONRF3
ClinGenLONRF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79836
Chemical/Pharm GKB GenePA134900980
Clinical trialLONRF3
Miscellaneous
canSAR (ICR)LONRF3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLONRF3
EVEXLONRF3
GoPubMedLONRF3
iHOPLONRF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:05:48 CEST 2017

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