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LPAL2 (lipoprotein(a) like 2, pseudogene)

Identity

Alias_namesAPOAL
apolipoprotein A-like
lipoprotein, Lp(a)-like 2
lipoprotein, Lp(a)-like 2, pseudogene
Alias_symbol (synonym)APOARGC
Other aliasAPOA2
apo(a)rg-C
HGNC (Hugo) LPAL2
LocusID (NCBI) 80350
Atlas_Id 68557
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 160452431 and ends at 160483369 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PARK2 (6q26) / LPAL2 (6q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LPAL2   21210
Cards
Entrez_Gene (NCBI)LPAL2  80350  lipoprotein(a) like 2, pseudogene
AliasesAPOA2; APOAL; APOARGC; apo(a)rg-C
GeneCards (Weizmann)LPAL2
Ensembl hg19 (Hinxton)ENSG00000213071 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213071 [Gene_View]  ENSG00000213071 [Sequence]  chr6:160452431-160483369 [Contig_View]  LPAL2 [Vega]
ICGC DataPortalENSG00000213071
TCGA cBioPortalLPAL2
AceView (NCBI)LPAL2
Genatlas (Paris)LPAL2
WikiGenes80350
SOURCE (Princeton)LPAL2
Genetics Home Reference (NIH)LPAL2
Genomic and cartography
GoldenPath hg38 (UCSC)LPAL2  -     chr6:160452431-160483369 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LPAL2  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblLPAL2 - 6q25.3 [CytoView hg19]  LPAL2 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBILPAL2 [Mapview hg19]  LPAL2 [Mapview hg38]
OMIM611682   
Gene and transcription
Genbank (Entrez)AK125910 BC110570 BC166644 DB312928 U19517
RefSeq transcript (Entrez)NM_024492 NM_145727
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LPAL2
Cluster EST : UnigeneHs.654503 [ NCBI ]
CGAP (NCI)Hs.654503
Alternative Splicing GalleryENSG00000213071
Gene ExpressionLPAL2 [ NCBI-GEO ]   LPAL2 [ EBI - ARRAY_EXPRESS ]   LPAL2 [ SEEK ]   LPAL2 [ MEM ]
Gene Expression Viewer (FireBrowse)LPAL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80350
GTEX Portal (Tissue expression)LPAL2
Human Protein AtlasENSG00000213071-LPAL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16609   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16609  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16609
Splice isoforms : SwissVarQ16609
PhosPhoSitePlusQ16609
Domaine pattern : Prosite (Expaxy)KRINGLE_1 (PS00021)    KRINGLE_2 (PS50070)   
Domains : Interpro (EBI)Kringle    Kringle-like    Kringle_CS   
Domain families : Pfam (Sanger)Kringle (PF00051)   
Domain families : Pfam (NCBI)pfam00051   
Domain families : Smart (EMBL)KR (SM00130)  
Conserved Domain (NCBI)LPAL2
DMDM Disease mutations80350
Blocks (Seattle)LPAL2
SuperfamilyQ16609
Human Protein Atlas [tissue]ENSG00000213071-LPAL2 [tissue]
Peptide AtlasQ16609
HPRD17441
IPIIPI00017390   
Protein Interaction databases
DIP (DOE-UCLA)Q16609
IntAct (EBI)Q16609
FunCoupENSG00000213071
BioGRIDLPAL2
STRING (EMBL)LPAL2
ZODIACLPAL2
Ontologies - Pathways
QuickGOQ16609
Ontology : AmiGOmolecular_function  protein binding  cellular_component  extracellular region  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  extracellular region  biological_process  
NDEx NetworkLPAL2
Atlas of Cancer Signalling NetworkLPAL2
Wikipedia pathwaysLPAL2
Orthology - Evolution
OrthoDB80350
GeneTree (enSembl)ENSG00000213071
Phylogenetic Trees/Animal Genes : TreeFamLPAL2
HOVERGENQ16609
HOGENOMQ16609
Homologs : HomoloGeneLPAL2
Homology/Alignments : Family Browser (UCSC)LPAL2
Gene fusions - Rearrangements
Fusion : QuiverLPAL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLPAL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPAL2
dbVarLPAL2
ClinVarLPAL2
1000_GenomesLPAL2 
Exome Variant ServerLPAL2
ExAC (Exome Aggregation Consortium)ENSG00000213071
GNOMAD BrowserENSG00000213071
Varsome BrowserLPAL2
Genetic variants : HAPMAP80350
Genomic Variants (DGV)LPAL2 [DGVbeta]
DECIPHERLPAL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLPAL2 
Mutations
ICGC Data PortalLPAL2 
TCGA Data PortalLPAL2 
Broad Tumor PortalLPAL2
OASIS PortalLPAL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLPAL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLPAL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LPAL2
DgiDB (Drug Gene Interaction Database)LPAL2
DoCM (Curated mutations)LPAL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPAL2 (select a term)
intoGenLPAL2
Cancer3DLPAL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611682   
Orphanet
DisGeNETLPAL2
MedgenLPAL2
Genetic Testing Registry LPAL2
NextProtQ16609 [Medical]
TSGene80350
GENETestsLPAL2
Target ValidationLPAL2
Huge Navigator LPAL2 [HugePedia]
snp3D : Map Gene to Disease80350
BioCentury BCIQLPAL2
ClinGenLPAL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80350
Chemical/Pharm GKB GenePA30434
Clinical trialLPAL2
Miscellaneous
canSAR (ICR)LPAL2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPAL2
EVEXLPAL2
GoPubMedLPAL2
iHOPLPAL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:11:30 CEST 2018

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