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LPAR4 (lysophosphatidic acid receptor 4)

Identity

Alias_namesGPR23
G protein-coupled receptor 23
Alias_symbol (synonym)P2Y9
P2Y5-LIKE
P2RY9
LPA4
Other alias
HGNC (Hugo) LPAR4
LocusID (NCBI) 2846
Atlas_Id 52043
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 78003206 and ends at 78011901 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LPAR4   4478
Cards
Entrez_Gene (NCBI)LPAR4  2846  lysophosphatidic acid receptor 4
AliasesGPR23; LPA4; P2RY9; P2Y5-LIKE; 
P2Y9
GeneCards (Weizmann)LPAR4
Ensembl hg19 (Hinxton)ENSG00000147145 [Gene_View]  chrX:78003206-78011901 [Contig_View]  LPAR4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147145 [Gene_View]  chrX:78003206-78011901 [Contig_View]  LPAR4 [Vega]
ICGC DataPortalENSG00000147145
TCGA cBioPortalLPAR4
AceView (NCBI)LPAR4
Genatlas (Paris)LPAR4
WikiGenes2846
SOURCE (Princeton)LPAR4
Genetics Home Reference (NIH)LPAR4
Genomic and cartography
GoldenPath hg19 (UCSC)LPAR4  -     chrX:78003206-78011901 +  Xq21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LPAR4  -     Xq21.1   [Description]    (hg38-Dec_2013)
EnsemblLPAR4 - Xq21.1 [CytoView hg19]  LPAR4 - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBILPAR4 [Mapview hg19]  LPAR4 [Mapview hg38]
OMIM300086   
Gene and transcription
Genbank (Entrez)AA424772 AK314134 AU129897 BC069996 BC074722
RefSeq transcript (Entrez)NM_001278000 NM_005296
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_013242 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)LPAR4
Cluster EST : UnigeneHs.522701 [ NCBI ]
CGAP (NCI)Hs.522701
Alternative Splicing GalleryENSG00000147145
Gene ExpressionLPAR4 [ NCBI-GEO ]   LPAR4 [ EBI - ARRAY_EXPRESS ]   LPAR4 [ SEEK ]   LPAR4 [ MEM ]
Gene Expression Viewer (FireBrowse)LPAR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2846
GTEX Portal (Tissue expression)LPAR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99677   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99677  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99677
Splice isoforms : SwissVarQ99677
PhosPhoSitePlusQ99677
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)LPAR4
DMDM Disease mutations2846
Blocks (Seattle)LPAR4
SuperfamilyQ99677
Human Protein AtlasENSG00000147145
Peptide AtlasQ99677
HPRD02099
IPIIPI00017041   
Protein Interaction databases
DIP (DOE-UCLA)Q99677
IntAct (EBI)Q99677
FunCoupENSG00000147145
BioGRIDLPAR4
STRING (EMBL)LPAR4
ZODIACLPAR4
Ontologies - Pathways
QuickGOQ99677
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  lysophosphatidic acid binding  lysophosphatidic acid receptor activity  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  lysophosphatidic acid binding  lysophosphatidic acid receptor activity  
Pathways : KEGGRap1 signaling pathway    Neuroactive ligand-receptor interaction    PI3K-Akt signaling pathway   
NDEx NetworkLPAR4
Atlas of Cancer Signalling NetworkLPAR4
Wikipedia pathwaysLPAR4
Orthology - Evolution
OrthoDB2846
GeneTree (enSembl)ENSG00000147145
Phylogenetic Trees/Animal Genes : TreeFamLPAR4
HOVERGENQ99677
HOGENOMQ99677
Homologs : HomoloGeneLPAR4
Homology/Alignments : Family Browser (UCSC)LPAR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLPAR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPAR4
dbVarLPAR4
ClinVarLPAR4
1000_GenomesLPAR4 
Exome Variant ServerLPAR4
ExAC (Exome Aggregation Consortium)LPAR4 (select the gene name)
Genetic variants : HAPMAP2846
Genomic Variants (DGV)LPAR4 [DGVbeta]
DECIPHER (Syndromes)X:78003206-78011901  ENSG00000147145
CONAN: Copy Number AnalysisLPAR4 
Mutations
ICGC Data PortalLPAR4 
TCGA Data PortalLPAR4 
Broad Tumor PortalLPAR4
OASIS PortalLPAR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLPAR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLPAR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch LPAR4
DgiDB (Drug Gene Interaction Database)LPAR4
DoCM (Curated mutations)LPAR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPAR4 (select a term)
intoGenLPAR4
Cancer3DLPAR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300086   
Orphanet905   
MedgenLPAR4
Genetic Testing Registry LPAR4
NextProtQ99677 [Medical]
TSGene2846
GENETestsLPAR4
Huge Navigator LPAR4 [HugePedia]
snp3D : Map Gene to Disease2846
BioCentury BCIQLPAR4
ClinGenLPAR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2846
Chemical/Pharm GKB GenePA162394222
Clinical trialLPAR4
Miscellaneous
canSAR (ICR)LPAR4 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPAR4
EVEXLPAR4
GoPubMedLPAR4
iHOPLPAR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:07:48 CEST 2017

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