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LPAR6 (lysophosphatidic acid receptor 6)

Identity

Other namesARWH1
HYPT8
LAH3
P2RY5
P2Y5
HGNC (Hugo) LPAR6
LocusID (NCBI) 10161
Atlas_Id 41626
Location 13q14.2
Location_base_pair Starts at 48985182 and ends at 49001043 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
EBPL 13q14.2 / LPAR6 13q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LPAR6   15520
Cards
Entrez_Gene (NCBI)LPAR6  10161  lysophosphatidic acid receptor 6
GeneCards (Weizmann)LPAR6
Ensembl hg19 (Hinxton)ENSG00000139679 [Gene_View]  chr13:48985182-49001043 [Contig_View]  LPAR6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000139679 [Gene_View]  chr13:48985182-49001043 [Contig_View]  LPAR6 [Vega]
ICGC DataPortalENSG00000139679
TCGA cBioPortalLPAR6
AceView (NCBI)LPAR6
Genatlas (Paris)LPAR6
WikiGenes10161
SOURCE (Princeton)LPAR6
Genomic and cartography
GoldenPath hg19 (UCSC)LPAR6  -     chr13:48985182-49001043 -  13q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LPAR6  -     13q14.2   [Description]    (hg38-Dec_2013)
EnsemblLPAR6 - 13q14.2 [CytoView hg19]  LPAR6 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBILPAR6 [Mapview hg19]  LPAR6 [Mapview hg38]
OMIM278150   609239   
Gene and transcription
Genbank (Entrez)AF000546 AK122856 AK123059 AK223389 BC039373
RefSeq transcript (Entrez)NM_001162497 NM_001162498 NM_005767
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_009009 NG_012874 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)LPAR6
Cluster EST : UnigeneHs.123464 [ NCBI ]
CGAP (NCI)Hs.123464
Alternative Splicing : Fast-db (Paris)GSHG0008484
Alternative Splicing GalleryENSG00000139679
Gene ExpressionLPAR6 [ NCBI-GEO ]     LPAR6 [ SEEK ]   LPAR6 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10161
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43657 (Uniprot)
NextProtP43657  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43657
Splice isoforms : SwissVarP43657 (Swissvar)
PhosPhoSitePlusP43657
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations10161
Blocks (Seattle)LPAR6
Human Protein AtlasENSG00000139679
Peptide AtlasP43657
HPRD16465
IPIIPI00019955   
Protein Interaction databases
DIP (DOE-UCLA)P43657
IntAct (EBI)P43657
FunCoupENSG00000139679
BioGRIDLPAR6
IntegromeDBLPAR6
STRING (EMBL)LPAR6
ZODIACLPAR6
Ontologies - Pathways
QuickGOP43657
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Pathways : KEGGNeuroactive ligand-receptor interaction    PI3K-Akt signaling pathway   
Protein Interaction DatabaseLPAR6
Atlas of Cancer Signalling NetworkLPAR6
Wikipedia pathwaysLPAR6
Orthology - Evolution
OrthoDB10161
GeneTree (enSembl)ENSG00000139679
Phylogenetic Trees/Animal Genes : TreeFamLPAR6
Homologs : HomoloGeneLPAR6
Homology/Alignments : Family Browser (UCSC)LPAR6
Gene fusions - Rearrangements
Fusion: TCGAEBPL 13q14.2 LPAR6 13q14.2 HNSC
Polymorphisms : SNP, variants
NCBI Variation ViewerLPAR6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPAR6
dbVarLPAR6
ClinVarLPAR6
1000_GenomesLPAR6 
Exome Variant ServerLPAR6
Exome Aggregation Consortium (ExAC)ENSG00000139679
SNP (GeneSNP Utah)LPAR6
SNP : HGBaseLPAR6
Genetic variants : HAPMAPLPAR6
Genomic Variants (DGV)LPAR6 [DGVbeta]
Mutations
ICGC Data PortalLPAR6 
TCGA Data PortalLPAR6 
Tumor PortalLPAR6
TCGA Copy Number PortalLPAR6
Somatic Mutations in Cancer : COSMICLPAR6 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LPAR6
DgiDB (Drug Gene Interaction Database)LPAR6
DoCM (Curated mutations)LPAR6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPAR6 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:48985182-49001043
CONAN: Copy Number AnalysisLPAR6 
Mutations and Diseases : HGMDLPAR6
OMIM278150    609239   
MedgenLPAR6
NextProtP43657 [Medical]
TSGene10161
GENETestsLPAR6
Huge Navigator LPAR6 [HugePedia]  LPAR6 [HugeCancerGEM]
snp3D : Map Gene to Disease10161
BioCentury BCIQLPAR6
General knowledge
Chemical/Protein Interactions : CTD10161
Chemical/Pharm GKB GenePA165505129
Clinical trialLPAR6
Other databases
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPAR6
GoPubMedLPAR6
iHOPLPAR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:57:00 CET 2016

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