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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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LPAR6 (lysophosphatidic acid receptor 6)

Identity

Other namesARWH1
HYPT8
LAH3
P2RY5
P2Y5
HGNC (Hugo) LPAR6
LocusID (NCBI) 10161
Location 13q14.2
Location_base_pair Starts at 48985182 and ends at 49001043 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)LPAR6   15520
Cards
Entrez_Gene (NCBI)LPAR6  10161  lysophosphatidic acid receptor 6
GeneCards (Weizmann)LPAR6
Ensembl hg19 (Hinxton)ENSG00000139679 [Gene_View]  chr13:48985182-49001043 [Contig_View]  LPAR6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000139679 [Gene_View]  chr13:48985182-49001043 [Contig_View]  LPAR6 [Vega]
ICGC DataPortalENSG00000139679
cBioPortalLPAR6
AceView (NCBI)LPAR6
Genatlas (Paris)LPAR6
WikiGenes10161
SOURCE (Princeton)LPAR6
Genomic and cartography
GoldenPath hg19 (UCSC)LPAR6  -     chr13:48985182-49001043 -  13q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LPAR6  -     13q14.2   [Description]    (hg38-Dec_2013)
EnsemblLPAR6 - 13q14.2 [CytoView hg19]  LPAR6 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBILPAR6 [Mapview hg19]  LPAR6 [Mapview hg38]
OMIM278150   609239   
Gene and transcription
Genbank (Entrez)AF000546 AK122856 AK123059 AK223389 BC039373
RefSeq transcript (Entrez)NM_001162497 NM_001162498 NM_005767
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NG_009009 NG_012874 NT_024524 NW_001838074 NW_004929388
Consensus coding sequences : CCDS (NCBI)LPAR6
Cluster EST : UnigeneHs.123464 [ NCBI ]
CGAP (NCI)Hs.123464
Alternative Splicing : Fast-db (Paris)GSHG0008484
Alternative Splicing GalleryENSG00000139679
Gene ExpressionLPAR6 [ NCBI-GEO ]     LPAR6 [ SEEK ]   LPAR6 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43657 (Uniprot)
NextProtP43657  [Medical]
With graphics : InterProP43657
Splice isoforms : SwissVarP43657 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Related proteins : CluSTrP43657
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations10161
Blocks (Seattle)P43657
Human Protein AtlasENSG00000139679
Peptide AtlasP43657
HPRD16465
IPIIPI00019955   
Protein Interaction databases
DIP (DOE-UCLA)P43657
IntAct (EBI)P43657
FunCoupENSG00000139679
BioGRIDLPAR6
IntegromeDBLPAR6
STRING (EMBL)LPAR6
Ontologies - Pathways
QuickGOP43657
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Pathways : KEGGNeuroactive ligand-receptor interaction    PI3K-Akt signaling pathway   
Protein Interaction DatabaseLPAR6
DoCM (Curated mutations)LPAR6
Wikipedia pathwaysLPAR6
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerLPAR6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPAR6
dbVarLPAR6
ClinVarLPAR6
1000_GenomesLPAR6 
Exome Variant ServerLPAR6
SNP (GeneSNP Utah)LPAR6
SNP : HGBaseLPAR6
Genetic variants : HAPMAPLPAR6
Genomic Variants (DGV)LPAR6 [DGVbeta]
Mutations
ICGC Data PortalENSG00000139679 
Somatic Mutations in Cancer : COSMICLPAR6 
CONAN: Copy Number AnalysisLPAR6 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:48985182-49001043
Mutations and Diseases : HGMDLPAR6
OMIM278150    609239   
MedgenLPAR6
NextProtP43657 [Medical]
GENETestsLPAR6
Disease Genetic AssociationLPAR6
Huge Navigator LPAR6 [HugePedia]  LPAR6 [HugeCancerGEM]
snp3D : Map Gene to Disease10161
DGIdb (Drug Gene Interaction db)LPAR6
General knowledge
Homologs : HomoloGeneLPAR6
Homology/Alignments : Family Browser (UCSC)LPAR6
Phylogenetic Trees/Animal Genes : TreeFamLPAR6
Chemical/Protein Interactions : CTD10161
Chemical/Pharm GKB GenePA165505129
Clinical trialLPAR6
Cancer Resource (Charite)ENSG00000139679
Other databases
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
CoreMineLPAR6
GoPubMedLPAR6
iHOPLPAR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 17:23:46 CET 2015

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