Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LPEQ6126 (uncharacterized LOC100128818)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100128818
Atlas_Id 68559
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 47115838 and ends at 47117215 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LPEQ6126  100128818  uncharacterized LOC100128818
Aliases
GeneCards (Weizmann)LPEQ6126
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:47115838-47117215 [Contig_View]  LPEQ6126 [Vega]
TCGA cBioPortalLPEQ6126
AceView (NCBI)LPEQ6126
Genatlas (Paris)LPEQ6126
WikiGenes100128818
SOURCE (Princeton)LPEQ6126
Genetics Home Reference (NIH)LPEQ6126
Genomic and cartography
GoldenPath hg38 (UCSC)LPEQ6126  -     chr22:47115838-47117215 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LPEQ6126  -     22q13.31   [Description]    (hg19-Feb_2009)
EnsemblLPEQ6126 - 22q13.31 [CytoView hg19]  LPEQ6126 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBILPEQ6126 [Mapview hg19]  LPEQ6126 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358194
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LPEQ6126
Cluster EST : UnigeneHs.689631 [ NCBI ]
CGAP (NCI)Hs.689631
Gene ExpressionLPEQ6126 [ NCBI-GEO ]   LPEQ6126 [ EBI - ARRAY_EXPRESS ]   LPEQ6126 [ SEEK ]   LPEQ6126 [ MEM ]
Gene Expression Viewer (FireBrowse)LPEQ6126 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128818
GTEX Portal (Tissue expression)LPEQ6126
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXV3
Splice isoforms : SwissVarQ6UXV3
PhosPhoSitePlusQ6UXV3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LPEQ6126
DMDM Disease mutations100128818
Blocks (Seattle)LPEQ6126
SuperfamilyQ6UXV3
Peptide AtlasQ6UXV3
IPIIPI00413189   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXV3
IntAct (EBI)Q6UXV3
BioGRIDLPEQ6126
STRING (EMBL)LPEQ6126
ZODIACLPEQ6126
Ontologies - Pathways
QuickGOQ6UXV3
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkLPEQ6126
Atlas of Cancer Signalling NetworkLPEQ6126
Wikipedia pathwaysLPEQ6126
Orthology - Evolution
OrthoDB100128818
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6UXV3
HOGENOMQ6UXV3
Homologs : HomoloGeneLPEQ6126
Homology/Alignments : Family Browser (UCSC)LPEQ6126
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLPEQ6126 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPEQ6126
dbVarLPEQ6126
ClinVarLPEQ6126
1000_GenomesLPEQ6126 
Exome Variant ServerLPEQ6126
ExAC (Exome Aggregation Consortium)LPEQ6126 (select the gene name)
Genetic variants : HAPMAP100128818
Genomic Variants (DGV)LPEQ6126 [DGVbeta]
DECIPHERLPEQ6126 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLPEQ6126 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LPEQ6126
DgiDB (Drug Gene Interaction Database)LPEQ6126
DoCM (Curated mutations)LPEQ6126 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPEQ6126 (select a term)
intoGenLPEQ6126
Cancer3DLPEQ6126(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLPEQ6126
Genetic Testing Registry LPEQ6126
NextProtQ6UXV3 [Medical]
TSGene100128818
GENETestsLPEQ6126
Target ValidationLPEQ6126
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100128818
BioCentury BCIQLPEQ6126
ClinGenLPEQ6126
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128818
Clinical trialLPEQ6126
Miscellaneous
canSAR (ICR)LPEQ6126 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPEQ6126
EVEXLPEQ6126
GoPubMedLPEQ6126
iHOPLPEQ6126
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:38 CEST 2017

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