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LPGAT1 (lysophosphatidylglycerol acyltransferase 1)

Identity

Alias_namesFAM34A
family with sequence similarity 34, member A
Alias_symbol (synonym)KIAA0205
FAM34A1
NET8
Other alias
HGNC (Hugo) LPGAT1
LocusID (NCBI) 9926
Atlas_Id 68560
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 211916799 and ends at 212004114 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CAMK2N1 (1p36.12) / LPGAT1 (1q32.3)KCNH1 (1q32.2) / LPGAT1 (1q32.3)LPGAT1 (1q32.3) / PCSK7 (11q23.3)
LPGAT1 (1q32.3) / SIX1 (14q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LPGAT1   28985
Cards
Entrez_Gene (NCBI)LPGAT1  9926  lysophosphatidylglycerol acyltransferase 1
AliasesFAM34A; FAM34A1; NET8
GeneCards (Weizmann)LPGAT1
Ensembl hg19 (Hinxton)ENSG00000123684 [Gene_View]  chr1:211916799-212004114 [Contig_View]  LPGAT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000123684 [Gene_View]  chr1:211916799-212004114 [Contig_View]  LPGAT1 [Vega]
ICGC DataPortalENSG00000123684
TCGA cBioPortalLPGAT1
AceView (NCBI)LPGAT1
Genatlas (Paris)LPGAT1
WikiGenes9926
SOURCE (Princeton)LPGAT1
Genetics Home Reference (NIH)LPGAT1
Genomic and cartography
GoldenPath hg19 (UCSC)LPGAT1  -     chr1:211916799-212004114 -  1q32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LPGAT1  -     1q32.3   [Description]    (hg38-Dec_2013)
EnsemblLPGAT1 - 1q32.3 [CytoView hg19]  LPGAT1 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBILPGAT1 [Mapview hg19]  LPGAT1 [Mapview hg38]
OMIM610473   
Gene and transcription
Genbank (Entrez)AI264005 AY561706 BC034621 D86960 HQ447838
RefSeq transcript (Entrez)NM_014873
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)LPGAT1
Cluster EST : UnigeneHs.744851 [ NCBI ]
CGAP (NCI)Hs.744851
Alternative Splicing GalleryENSG00000123684
Gene ExpressionLPGAT1 [ NCBI-GEO ]   LPGAT1 [ EBI - ARRAY_EXPRESS ]   LPGAT1 [ SEEK ]   LPGAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)LPGAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9926
GTEX Portal (Tissue expression)LPGAT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92604   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92604  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92604
Splice isoforms : SwissVarQ92604
PhosPhoSitePlusQ92604
Domains : Interpro (EBI)Plipid/glycerol_acylTrfase   
Domain families : Pfam (Sanger)Acyltransferase (PF01553)   
Domain families : Pfam (NCBI)pfam01553   
Domain families : Smart (EMBL)PlsC (SM00563)  
Conserved Domain (NCBI)LPGAT1
DMDM Disease mutations9926
Blocks (Seattle)LPGAT1
SuperfamilyQ92604
Human Protein AtlasENSG00000123684
Peptide AtlasQ92604
HPRD14304
IPIIPI00022447   
Protein Interaction databases
DIP (DOE-UCLA)Q92604
IntAct (EBI)Q92604
FunCoupENSG00000123684
BioGRIDLPGAT1
STRING (EMBL)LPGAT1
ZODIACLPGAT1
Ontologies - Pathways
QuickGOQ92604
Ontology : AmiGOmolecular_function  cytoplasm  endoplasmic reticulum membrane  phospholipid metabolic process  biological_process  membrane  integral component of membrane  transferase activity, transferring acyl groups  phosphatidylglycerol acyl-chain remodeling  small molecule metabolic process  glycerophospholipid biosynthetic process  
Ontology : EGO-EBImolecular_function  cytoplasm  endoplasmic reticulum membrane  phospholipid metabolic process  biological_process  membrane  integral component of membrane  transferase activity, transferring acyl groups  phosphatidylglycerol acyl-chain remodeling  small molecule metabolic process  glycerophospholipid biosynthetic process  
Pathways : KEGGGlycerophospholipid metabolism   
NDEx NetworkLPGAT1
Atlas of Cancer Signalling NetworkLPGAT1
Wikipedia pathwaysLPGAT1
Orthology - Evolution
OrthoDB9926
GeneTree (enSembl)ENSG00000123684
Phylogenetic Trees/Animal Genes : TreeFamLPGAT1
HOVERGENQ92604
HOGENOMQ92604
Homologs : HomoloGeneLPGAT1
Homology/Alignments : Family Browser (UCSC)LPGAT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLPGAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPGAT1
dbVarLPGAT1
ClinVarLPGAT1
1000_GenomesLPGAT1 
Exome Variant ServerLPGAT1
ExAC (Exome Aggregation Consortium)LPGAT1 (select the gene name)
Genetic variants : HAPMAP9926
Genomic Variants (DGV)LPGAT1 [DGVbeta]
DECIPHER (Syndromes)1:211916799-212004114  ENSG00000123684
CONAN: Copy Number AnalysisLPGAT1 
Mutations
ICGC Data PortalLPGAT1 
TCGA Data PortalLPGAT1 
Broad Tumor PortalLPGAT1
OASIS PortalLPGAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLPGAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLPGAT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LPGAT1
DgiDB (Drug Gene Interaction Database)LPGAT1
DoCM (Curated mutations)LPGAT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPGAT1 (select a term)
intoGenLPGAT1
Cancer3DLPGAT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610473   
Orphanet
MedgenLPGAT1
Genetic Testing Registry LPGAT1
NextProtQ92604 [Medical]
TSGene9926
GENETestsLPGAT1
Huge Navigator LPGAT1 [HugePedia]
snp3D : Map Gene to Disease9926
BioCentury BCIQLPGAT1
ClinGenLPGAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9926
Chemical/Pharm GKB GenePA134869091
Clinical trialLPGAT1
Miscellaneous
canSAR (ICR)LPGAT1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPGAT1
EVEXLPGAT1
GoPubMedLPGAT1
iHOPLPGAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:26:53 CET 2017

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