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LPIN3 (lipin 3)

Identity

Alias_namesLIPN3L
lipin 3-like
Alias_symbol (synonym)SMP2
Other alias
HGNC (Hugo) LPIN3
LocusID (NCBI) 64900
Atlas_Id 68564
Location 20q12  [Link to chromosome band 20q12]
Location_base_pair Starts at 41340853 and ends at 41360585 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LPIN3   14451
Cards
Entrez_Gene (NCBI)LPIN3  64900  lipin 3
AliasesLIPN3L; SMP2
GeneCards (Weizmann)LPIN3
Ensembl hg19 (Hinxton)ENSG00000132793 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132793 [Gene_View]  chr20:41340853-41360585 [Contig_View]  LPIN3 [Vega]
ICGC DataPortalENSG00000132793
TCGA cBioPortalLPIN3
AceView (NCBI)LPIN3
Genatlas (Paris)LPIN3
WikiGenes64900
SOURCE (Princeton)LPIN3
Genetics Home Reference (NIH)LPIN3
Genomic and cartography
GoldenPath hg38 (UCSC)LPIN3  -     chr20:41340853-41360585 +  20q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LPIN3  -     20q12   [Description]    (hg19-Feb_2009)
EnsemblLPIN3 - 20q12 [CytoView hg19]  LPIN3 - 20q12 [CytoView hg38]
Mapping of homologs : NCBILPIN3 [Mapview hg19]  LPIN3 [Mapview hg38]
OMIM605520   
Gene and transcription
Genbank (Entrez)BC140806 BC144598 BX505800 BX647082 BX648609
RefSeq transcript (Entrez)NM_001301860 NM_022896
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LPIN3
Cluster EST : UnigeneHs.25897 [ NCBI ]
CGAP (NCI)Hs.25897
Alternative Splicing GalleryENSG00000132793
Gene ExpressionLPIN3 [ NCBI-GEO ]   LPIN3 [ EBI - ARRAY_EXPRESS ]   LPIN3 [ SEEK ]   LPIN3 [ MEM ]
Gene Expression Viewer (FireBrowse)LPIN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64900
GTEX Portal (Tissue expression)LPIN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQK8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQK8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQK8
Splice isoforms : SwissVarQ9BQK8
Catalytic activity : Enzyme3.1.3.4 [ Enzyme-Expasy ]   3.1.3.43.1.3.4 [ IntEnz-EBI ]   3.1.3.4 [ BRENDA ]   3.1.3.4 [ KEGG ]   
PhosPhoSitePlusQ9BQK8
Domains : Interpro (EBI)HAD-like_dom    Lipin_mid    Lipin_N    LNS2    LNS2/PITP   
Domain families : Pfam (Sanger)Lipin_mid (PF16876)    Lipin_N (PF04571)    LNS2 (PF08235)   
Domain families : Pfam (NCBI)pfam16876    pfam04571    pfam08235   
Domain families : Smart (EMBL)LNS2 (SM00775)  
Conserved Domain (NCBI)LPIN3
DMDM Disease mutations64900
Blocks (Seattle)LPIN3
SuperfamilyQ9BQK8
Human Protein AtlasENSG00000132793
Peptide AtlasQ9BQK8
IPIIPI00924989   IPI00556641   IPI00513905   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQK8
IntAct (EBI)Q9BQK8
FunCoupENSG00000132793
BioGRIDLPIN3
STRING (EMBL)LPIN3
ZODIACLPIN3
Ontologies - Pathways
QuickGOQ9BQK8
Ontology : AmiGOtranscription coactivator activity  nucleus  endoplasmic reticulum membrane  phosphatidylethanolamine biosynthetic process  phosphatidylcholine biosynthetic process  phosphatidate phosphatase activity  phosphatidate phosphatase activity  fatty acid catabolic process  dephosphorylation  triglyceride biosynthetic process  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBItranscription coactivator activity  nucleus  endoplasmic reticulum membrane  phosphatidylethanolamine biosynthetic process  phosphatidylcholine biosynthetic process  phosphatidate phosphatase activity  phosphatidate phosphatase activity  fatty acid catabolic process  dephosphorylation  triglyceride biosynthetic process  positive regulation of transcription from RNA polymerase II promoter  
Pathways : KEGGGlycerolipid metabolism    Glycerophospholipid metabolism   
NDEx NetworkLPIN3
Atlas of Cancer Signalling NetworkLPIN3
Wikipedia pathwaysLPIN3
Orthology - Evolution
OrthoDB64900
GeneTree (enSembl)ENSG00000132793
Phylogenetic Trees/Animal Genes : TreeFamLPIN3
HOVERGENQ9BQK8
HOGENOMQ9BQK8
Homologs : HomoloGeneLPIN3
Homology/Alignments : Family Browser (UCSC)LPIN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLPIN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPIN3
dbVarLPIN3
ClinVarLPIN3
1000_GenomesLPIN3 
Exome Variant ServerLPIN3
ExAC (Exome Aggregation Consortium)LPIN3 (select the gene name)
Genetic variants : HAPMAP64900
Genomic Variants (DGV)LPIN3 [DGVbeta]
DECIPHERLPIN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLPIN3 
Mutations
ICGC Data PortalLPIN3 
TCGA Data PortalLPIN3 
Broad Tumor PortalLPIN3
OASIS PortalLPIN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLPIN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLPIN3
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LPIN3
DgiDB (Drug Gene Interaction Database)LPIN3
DoCM (Curated mutations)LPIN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPIN3 (select a term)
intoGenLPIN3
Cancer3DLPIN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605520   
Orphanet
MedgenLPIN3
Genetic Testing Registry LPIN3
NextProtQ9BQK8 [Medical]
TSGene64900
GENETestsLPIN3
Target ValidationLPIN3
Huge Navigator LPIN3 [HugePedia]
snp3D : Map Gene to Disease64900
BioCentury BCIQLPIN3
ClinGenLPIN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64900
Chemical/Pharm GKB GenePA30438
Clinical trialLPIN3
Miscellaneous
canSAR (ICR)LPIN3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPIN3
EVEXLPIN3
GoPubMedLPIN3
iHOPLPIN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:39 CEST 2017

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