Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LPP-AS2 (LPP antisense RNA 2)

Identity

Alias_namesLPP antisense RNA 2 (non-protein coding)
Alias_symbol (synonym)MYCLo-5
MYCLo-6
Other alias
HGNC (Hugo) LPP-AS2
LocusID (NCBI) 339929
Atlas_Id 68567
Location 3q27.3  [Link to chromosome band 3q27]
Location_base_pair Starts at 188151206 and ends at 188154088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LPP-AS2 (3q27.3) / ST6GAL1 (3q27.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LPP-AS2   27952
Cards
Entrez_Gene (NCBI)LPP-AS2  339929  LPP antisense RNA 2
AliasesMYCLo-5; MYCLo-6
GeneCards (Weizmann)LPP-AS2
Ensembl hg19 (Hinxton)ENSG00000270959 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270959 [Gene_View]  chr3:188151206-188154088 [Contig_View]  LPP-AS2 [Vega]
ICGC DataPortalENSG00000270959
TCGA cBioPortalLPP-AS2
AceView (NCBI)LPP-AS2
Genatlas (Paris)LPP-AS2
WikiGenes339929
SOURCE (Princeton)LPP-AS2
Genetics Home Reference (NIH)LPP-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)LPP-AS2  -     chr3:188151206-188154088 -  3q27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LPP-AS2  -     3q27.3   [Description]    (hg19-Feb_2009)
EnsemblLPP-AS2 - 3q27.3 [CytoView hg19]  LPP-AS2 - 3q27.3 [CytoView hg38]
Mapping of homologs : NCBILPP-AS2 [Mapview hg19]  LPP-AS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042414 JX046913 JX046914 JX046915
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LPP-AS2
Cluster EST : UnigeneHs.596639 [ NCBI ]
CGAP (NCI)Hs.596639
Alternative Splicing GalleryENSG00000270959
Gene ExpressionLPP-AS2 [ NCBI-GEO ]   LPP-AS2 [ EBI - ARRAY_EXPRESS ]   LPP-AS2 [ SEEK ]   LPP-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)LPP-AS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)339929
GTEX Portal (Tissue expression)LPP-AS2
Human Protein AtlasENSG00000270959-LPP-AS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LPP-AS2
DMDM Disease mutations339929
Blocks (Seattle)LPP-AS2
Human Protein Atlas [tissue]ENSG00000270959-LPP-AS2 [tissue]
Protein Interaction databases
FunCoupENSG00000270959
BioGRIDLPP-AS2
STRING (EMBL)LPP-AS2
ZODIACLPP-AS2
Ontologies - Pathways
Huge Navigator LPP-AS2 [HugePedia]
snp3D : Map Gene to Disease339929
BioCentury BCIQLPP-AS2
ClinGenLPP-AS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339929
Clinical trialLPP-AS2
Miscellaneous
canSAR (ICR)LPP-AS2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPP-AS2
EVEXLPP-AS2
GoPubMedLPP-AS2
iHOPLPP-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:08:12 CET 2017

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