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LPPR2 (lipid phosphate phosphatase-related protein type 2)

Identity

Other aliasPRG4
HGNC (Hugo) -
LocusID (NCBI) 64748
Atlas_Id 68568
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11466062 and ends at 11476374 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LPPR2  64748  lipid phosphate phosphatase-related protein type 2
AliasesPRG4
GeneCards (Weizmann)LPPR2
Ensembl hg19 (Hinxton)ENSG00000105520 [Gene_View]  chr19:11466062-11476374 [Contig_View]  LPPR2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105520 [Gene_View]  chr19:11466062-11476374 [Contig_View]  LPPR2 [Vega]
ICGC DataPortalENSG00000105520
TCGA cBioPortalLPPR2
AceView (NCBI)LPPR2
Genatlas (Paris)LPPR2
WikiGenes64748
SOURCE (Princeton)LPPR2
Genetics Home Reference (NIH)LPPR2
Genomic and cartography
GoldenPath hg19 (UCSC)LPPR2  -     chr19:11466062-11476374 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LPPR2  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblLPPR2 - 19p13.2 [CytoView hg19]  LPPR2 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBILPPR2 [Mapview hg19]  LPPR2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023117 AK094869 AK225482 AL353953 AY304516
RefSeq transcript (Entrez)NM_001170635 NM_022737
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)LPPR2
Cluster EST : UnigeneHs.6846 [ NCBI ]
CGAP (NCI)Hs.6846
Alternative Splicing GalleryENSG00000105520
Gene ExpressionLPPR2 [ NCBI-GEO ]   LPPR2 [ EBI - ARRAY_EXPRESS ]   LPPR2 [ SEEK ]   LPPR2 [ MEM ]
Gene Expression Viewer (FireBrowse)LPPR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64748
GTEX Portal (Tissue expression)LPPR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GM1
Splice isoforms : SwissVarQ96GM1
Catalytic activity : Enzyme3.1.3.4 [ Enzyme-Expasy ]   3.1.3.43.1.3.4 [ IntEnz-EBI ]   3.1.3.4 [ BRENDA ]   3.1.3.4 [ KEGG ]   
PhosPhoSitePlusQ96GM1
Domains : Interpro (EBI)LPPR2    P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)LPPR2
DMDM Disease mutations64748
Blocks (Seattle)LPPR2
SuperfamilyQ96GM1
Human Protein AtlasENSG00000105520
Peptide AtlasQ96GM1
HPRD17442
IPIIPI00396363   IPI00166272   
Protein Interaction databases
DIP (DOE-UCLA)Q96GM1
IntAct (EBI)Q96GM1
FunCoupENSG00000105520
BioGRIDLPPR2
STRING (EMBL)LPPR2
ZODIACLPPR2
Ontologies - Pathways
QuickGOQ96GM1
Ontology : AmiGOphosphatidate phosphatase activity  integral component of membrane  dephosphorylation  
Ontology : EGO-EBIphosphatidate phosphatase activity  integral component of membrane  dephosphorylation  
NDEx NetworkLPPR2
Atlas of Cancer Signalling NetworkLPPR2
Wikipedia pathwaysLPPR2
Orthology - Evolution
OrthoDB64748
GeneTree (enSembl)ENSG00000105520
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ96GM1
HOGENOMQ96GM1
Homologs : HomoloGeneLPPR2
Homology/Alignments : Family Browser (UCSC)LPPR2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLPPR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPPR2
dbVarLPPR2
ClinVarLPPR2
1000_GenomesLPPR2 
Exome Variant ServerLPPR2
ExAC (Exome Aggregation Consortium)LPPR2 (select the gene name)
Genetic variants : HAPMAP64748
Genomic Variants (DGV)LPPR2 [DGVbeta]
DECIPHER (Syndromes)19:11466062-11476374  ENSG00000105520
CONAN: Copy Number AnalysisLPPR2 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLPPR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
BioMutasearch LPPR2
DgiDB (Drug Gene Interaction Database)LPPR2
DoCM (Curated mutations)LPPR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPPR2 (select a term)
intoGenLPPR2
Cancer3DLPPR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLPPR2
Genetic Testing Registry LPPR2
NextProtQ96GM1 [Medical]
TSGene64748
GENETestsLPPR2
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease64748
BioCentury BCIQLPPR2
ClinGenLPPR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64748
Clinical trialLPPR2
Miscellaneous
canSAR (ICR)LPPR2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPPR2
EVEXLPPR2
GoPubMedLPPR2
iHOPLPPR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:26:54 CET 2017

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