Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LPPR3 (lipid phosphate phosphatase-related protein type 3)

Identity

Other aliasLPR3
PRG-2
PRG2
HGNC (Hugo) -
LocusID (NCBI) 79948
Atlas_Id 68569
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 812488 and ends at 821952 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LPPR3  79948  lipid phosphate phosphatase-related protein type 3
AliasesLPR3; PRG-2; PRG2
GeneCards (Weizmann)LPPR3
Ensembl hg19 (Hinxton)ENSG00000129951 [Gene_View]  chr19:812488-821952 [Contig_View]  LPPR3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000129951 [Gene_View]  chr19:812488-821952 [Contig_View]  LPPR3 [Vega]
ICGC DataPortalENSG00000129951
TCGA cBioPortalLPPR3
AceView (NCBI)LPPR3
Genatlas (Paris)LPPR3
WikiGenes79948
SOURCE (Princeton)LPPR3
Genetics Home Reference (NIH)LPPR3
Genomic and cartography
GoldenPath hg19 (UCSC)LPPR3  -     chr19:812488-821952 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LPPR3  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblLPPR3 - 19p13.3 [CytoView hg19]  LPPR3 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBILPPR3 [Mapview hg19]  LPPR3 [Mapview hg38]
OMIM610391   
Gene and transcription
Genbank (Entrez)AF357888 AF541282 AK021597 AL136596 AY304517
RefSeq transcript (Entrez)NM_001270366 NM_024888
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)LPPR3
Cluster EST : UnigeneHs.745399 [ NCBI ]
CGAP (NCI)Hs.745399
Alternative Splicing GalleryENSG00000129951
Gene ExpressionLPPR3 [ NCBI-GEO ]   LPPR3 [ EBI - ARRAY_EXPRESS ]   LPPR3 [ SEEK ]   LPPR3 [ MEM ]
Gene Expression Viewer (FireBrowse)LPPR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79948
GTEX Portal (Tissue expression)LPPR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6T4P5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6T4P5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6T4P5
Splice isoforms : SwissVarQ6T4P5
Catalytic activity : Enzyme3.1.3.4 [ Enzyme-Expasy ]   3.1.3.43.1.3.4 [ IntEnz-EBI ]   3.1.3.4 [ BRENDA ]   3.1.3.4 [ KEGG ]   
PhosPhoSitePlusQ6T4P5
Domains : Interpro (EBI)LPPR3    P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)LPPR3
DMDM Disease mutations79948
Blocks (Seattle)LPPR3
SuperfamilyQ6T4P5
Human Protein AtlasENSG00000129951
Peptide AtlasQ6T4P5
HPRD07755
IPIIPI00885019   IPI00016464   IPI00884989   IPI00419236   IPI00982942   IPI00974325   
Protein Interaction databases
DIP (DOE-UCLA)Q6T4P5
IntAct (EBI)Q6T4P5
FunCoupENSG00000129951
BioGRIDLPPR3
STRING (EMBL)LPPR3
ZODIACLPPR3
Ontologies - Pathways
QuickGOQ6T4P5
Ontology : AmiGOphosphatidate phosphatase activity  integral component of membrane  dephosphorylation  
Ontology : EGO-EBIphosphatidate phosphatase activity  integral component of membrane  dephosphorylation  
NDEx NetworkLPPR3
Atlas of Cancer Signalling NetworkLPPR3
Wikipedia pathwaysLPPR3
Orthology - Evolution
OrthoDB79948
GeneTree (enSembl)ENSG00000129951
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6T4P5
HOGENOMQ6T4P5
Homologs : HomoloGeneLPPR3
Homology/Alignments : Family Browser (UCSC)LPPR3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLPPR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPPR3
dbVarLPPR3
ClinVarLPPR3
1000_GenomesLPPR3 
Exome Variant ServerLPPR3
ExAC (Exome Aggregation Consortium)LPPR3 (select the gene name)
Genetic variants : HAPMAP79948
Genomic Variants (DGV)LPPR3 [DGVbeta]
DECIPHER (Syndromes)19:812488-821952  ENSG00000129951
CONAN: Copy Number AnalysisLPPR3 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LPPR3
DgiDB (Drug Gene Interaction Database)LPPR3
DoCM (Curated mutations)LPPR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPPR3 (select a term)
intoGenLPPR3
Cancer3DLPPR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610391   
Orphanet
MedgenLPPR3
Genetic Testing Registry LPPR3
NextProtQ6T4P5 [Medical]
TSGene79948
GENETestsLPPR3
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease79948
BioCentury BCIQLPPR3
ClinGenLPPR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79948
Clinical trialLPPR3
Miscellaneous
canSAR (ICR)LPPR3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPPR3
EVEXLPPR3
GoPubMedLPPR3
iHOPLPPR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:26:55 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.