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LPPR4 (lipid phosphate phosphatase-related protein type 4)

Identity

Other aliasLPR4
PHP1
PRG-1
PRG1
HGNC (Hugo) -
LocusID (NCBI) 9890
Atlas_Id 68570
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 99729848 and ends at 99775138 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LPPR4  9890  lipid phosphate phosphatase-related protein type 4
AliasesLPR4; PHP1; PRG-1; PRG1
GeneCards (Weizmann)LPPR4
Ensembl hg19 (Hinxton)ENSG00000117600 [Gene_View]  chr1:99729848-99775138 [Contig_View]  LPPR4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000117600 [Gene_View]  chr1:99729848-99775138 [Contig_View]  LPPR4 [Vega]
ICGC DataPortalENSG00000117600
TCGA cBioPortalLPPR4
AceView (NCBI)LPPR4
Genatlas (Paris)LPPR4
WikiGenes9890
SOURCE (Princeton)LPPR4
Genetics Home Reference (NIH)LPPR4
Genomic and cartography
GoldenPath hg19 (UCSC)LPPR4  -     chr1:99729848-99775138 +  1p21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LPPR4  -     1p21.2   [Description]    (hg38-Dec_2013)
EnsemblLPPR4 - 1p21.2 [CytoView hg19]  LPPR4 - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBILPPR4 [Mapview hg19]  LPPR4 [Mapview hg38]
OMIM607813   
Gene and transcription
Genbank (Entrez)AB007924 AF357013 AF541281 AK291369 AK300361
RefSeq transcript (Entrez)NM_001166252 NM_014839
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)LPPR4
Cluster EST : UnigeneHs.13245 [ NCBI ]
CGAP (NCI)Hs.13245
Alternative Splicing GalleryENSG00000117600
Gene ExpressionLPPR4 [ NCBI-GEO ]   LPPR4 [ EBI - ARRAY_EXPRESS ]   LPPR4 [ SEEK ]   LPPR4 [ MEM ]
Gene Expression Viewer (FireBrowse)LPPR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9890
GTEX Portal (Tissue expression)LPPR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2D5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2D5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2D5
Splice isoforms : SwissVarQ7Z2D5
Catalytic activity : Enzyme3.1.3.4 [ Enzyme-Expasy ]   3.1.3.43.1.3.4 [ IntEnz-EBI ]   3.1.3.4 [ BRENDA ]   3.1.3.4 [ KEGG ]   
PhosPhoSitePlusQ7Z2D5
Domains : Interpro (EBI)LPPR4    P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)LPPR4
DMDM Disease mutations9890
Blocks (Seattle)LPPR4
SuperfamilyQ7Z2D5
Human Protein AtlasENSG00000117600
Peptide AtlasQ7Z2D5
HPRD07425
IPIIPI00337643   IPI00844586   IPI00640138   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2D5
IntAct (EBI)Q7Z2D5
FunCoupENSG00000117600
BioGRIDLPPR4
STRING (EMBL)LPPR4
ZODIACLPPR4
Ontologies - Pathways
QuickGOQ7Z2D5
Ontology : AmiGOintegral component of plasma membrane  axonogenesis  phosphatidate phosphatase activity  lipid phosphatase activity  phospholipid dephosphorylation  inner ear development  
Ontology : EGO-EBIintegral component of plasma membrane  axonogenesis  phosphatidate phosphatase activity  lipid phosphatase activity  phospholipid dephosphorylation  inner ear development  
NDEx NetworkLPPR4
Atlas of Cancer Signalling NetworkLPPR4
Wikipedia pathwaysLPPR4
Orthology - Evolution
OrthoDB9890
GeneTree (enSembl)ENSG00000117600
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ7Z2D5
HOGENOMQ7Z2D5
Homologs : HomoloGeneLPPR4
Homology/Alignments : Family Browser (UCSC)LPPR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLPPR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPPR4
dbVarLPPR4
ClinVarLPPR4
1000_GenomesLPPR4 
Exome Variant ServerLPPR4
ExAC (Exome Aggregation Consortium)LPPR4 (select the gene name)
Genetic variants : HAPMAP9890
Genomic Variants (DGV)LPPR4 [DGVbeta]
DECIPHER (Syndromes)1:99729848-99775138  ENSG00000117600
CONAN: Copy Number AnalysisLPPR4 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLPPR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
BioMutasearch LPPR4
DgiDB (Drug Gene Interaction Database)LPPR4
DoCM (Curated mutations)LPPR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPPR4 (select a term)
intoGenLPPR4
Cancer3DLPPR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607813   
Orphanet
MedgenLPPR4
Genetic Testing Registry LPPR4
NextProtQ7Z2D5 [Medical]
TSGene9890
GENETestsLPPR4
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease9890
BioCentury BCIQLPPR4
ClinGenLPPR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9890
Clinical trialLPPR4
Miscellaneous
canSAR (ICR)LPPR4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPPR4
EVEXLPPR4
GoPubMedLPPR4
iHOPLPPR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:26:55 CET 2017

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