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LPPR5 (lipid phosphate phosphatase-related protein type 5)

Identity

Other aliasPAP2
PAP2D
PRG5
HGNC (Hugo) -
LocusID (NCBI) 163404
Atlas_Id 68571
Location 1p21.3  [Link to chromosome band 1p21]
Location_base_pair Starts at 99355801 and ends at 99470449 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LPPR5  163404  lipid phosphate phosphatase-related protein type 5
AliasesPAP2; PAP2D; PRG5
GeneCards (Weizmann)LPPR5
Ensembl hg19 (Hinxton)ENSG00000117598 [Gene_View]  chr1:99355801-99470449 [Contig_View]  LPPR5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000117598 [Gene_View]  chr1:99355801-99470449 [Contig_View]  LPPR5 [Vega]
ICGC DataPortalENSG00000117598
TCGA cBioPortalLPPR5
AceView (NCBI)LPPR5
Genatlas (Paris)LPPR5
WikiGenes163404
SOURCE (Princeton)LPPR5
Genetics Home Reference (NIH)LPPR5
Genomic and cartography
GoldenPath hg19 (UCSC)LPPR5  -     chr1:99355801-99470449 -  1p21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LPPR5  -     1p21.3   [Description]    (hg38-Dec_2013)
EnsemblLPPR5 - 1p21.3 [CytoView hg19]  LPPR5 - 1p21.3 [CytoView hg38]
Mapping of homologs : NCBILPPR5 [Mapview hg19]  LPPR5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131783 AK295688 AY574039 AY634620 BC040174
RefSeq transcript (Entrez)NM_001010861 NM_001037317
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)LPPR5
Cluster EST : UnigeneHs.483948 [ NCBI ]
CGAP (NCI)Hs.483948
Alternative Splicing GalleryENSG00000117598
Gene ExpressionLPPR5 [ NCBI-GEO ]   LPPR5 [ EBI - ARRAY_EXPRESS ]   LPPR5 [ SEEK ]   LPPR5 [ MEM ]
Gene Expression Viewer (FireBrowse)LPPR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163404
GTEX Portal (Tissue expression)LPPR5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32ZL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32ZL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32ZL2
Splice isoforms : SwissVarQ32ZL2
Catalytic activity : Enzyme3.1.3.- [ Enzyme-Expasy ]   3.1.3.-3.1.3.- [ IntEnz-EBI ]   3.1.3.- [ BRENDA ]   3.1.3.- [ KEGG ]   
PhosPhoSitePlusQ32ZL2
Domains : Interpro (EBI)LPPR5    P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)LPPR5
DMDM Disease mutations163404
Blocks (Seattle)LPPR5
SuperfamilyQ32ZL2
Human Protein AtlasENSG00000117598
Peptide AtlasQ32ZL2
HPRD12966
IPIIPI00656084   IPI00402043   
Protein Interaction databases
DIP (DOE-UCLA)Q32ZL2
IntAct (EBI)Q32ZL2
FunCoupENSG00000117598
BioGRIDLPPR5
STRING (EMBL)LPPR5
ZODIACLPPR5
Ontologies - Pathways
QuickGOQ32ZL2
Ontology : AmiGOmetabolic process  integral component of membrane  hydrolase activity  
Ontology : EGO-EBImetabolic process  integral component of membrane  hydrolase activity  
NDEx NetworkLPPR5
Atlas of Cancer Signalling NetworkLPPR5
Wikipedia pathwaysLPPR5
Orthology - Evolution
OrthoDB163404
GeneTree (enSembl)ENSG00000117598
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ32ZL2
HOGENOMQ32ZL2
Homologs : HomoloGeneLPPR5
Homology/Alignments : Family Browser (UCSC)LPPR5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLPPR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LPPR5
dbVarLPPR5
ClinVarLPPR5
1000_GenomesLPPR5 
Exome Variant ServerLPPR5
ExAC (Exome Aggregation Consortium)LPPR5 (select the gene name)
Genetic variants : HAPMAP163404
Genomic Variants (DGV)LPPR5 [DGVbeta]
DECIPHER (Syndromes)1:99355801-99470449  ENSG00000117598
CONAN: Copy Number AnalysisLPPR5 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LPPR5
DgiDB (Drug Gene Interaction Database)LPPR5
DoCM (Curated mutations)LPPR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LPPR5 (select a term)
intoGenLPPR5
Cancer3DLPPR5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLPPR5
Genetic Testing Registry LPPR5
NextProtQ32ZL2 [Medical]
TSGene163404
GENETestsLPPR5
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease163404
BioCentury BCIQLPPR5
ClinGenLPPR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163404
Clinical trialLPPR5
Miscellaneous
canSAR (ICR)LPPR5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLPPR5
EVEXLPPR5
GoPubMedLPPR5
iHOPLPPR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:26:55 CET 2017

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