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LRATD2 (family with sequence similarity 84 member B)

Identity

Alias_namesfamily with sequence similarity 84
Alias_symbol (synonym)BCMP101
NSE2
Other alias
HGNC (Hugo) LRATD2
LocusID (NCBI) 157638
Atlas_Id 41585
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 126552438 and ends at 126558466 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LRATD2   24166
Cards
Entrez_Gene (NCBI)LRATD2  157638  family with sequence similarity 84 member B
AliasesBCMP101; NSE2
GeneCards (Weizmann)LRATD2
Ensembl hg19 (Hinxton)ENSG00000168672 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168672 [Gene_View]  ENSG00000168672 [Sequence]  chr8:126552438-126558466 [Contig_View]  LRATD2 [Vega]
ICGC DataPortalENSG00000168672
TCGA cBioPortalLRATD2
AceView (NCBI)LRATD2
Genatlas (Paris)LRATD2
WikiGenes157638
SOURCE (Princeton)LRATD2
Genetics Home Reference (NIH)LRATD2
Genomic and cartography
GoldenPath hg38 (UCSC)LRATD2  -     chr8:126552438-126558466 -  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRATD2  -     8q24.21   [Description]    (hg19-Feb_2009)
LRATD2 - 8q24.21 [CytoView hg19]  LRATD2 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBILRATD2 [Mapview hg19]  LRATD2 [Mapview hg38]
OMIM609483   
Gene and transcription
Genbank (Entrez)AJ417849 AK074285 AK292824 BC033717 BC052957
RefSeq transcript (Entrez)NM_174911
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRATD2
Cluster EST : UnigeneHs.741352 [ NCBI ]
CGAP (NCI)Hs.741352
Alternative Splicing GalleryENSG00000168672
Gene ExpressionLRATD2 [ NCBI-GEO ]   LRATD2 [ EBI - ARRAY_EXPRESS ]   LRATD2 [ SEEK ]   LRATD2 [ MEM ]
Gene Expression Viewer (FireBrowse)LRATD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157638
GTEX Portal (Tissue expression)LRATD2
Human Protein AtlasENSG00000168672-LRATD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KN1
Splice isoforms : SwissVarQ96KN1
PhosPhoSitePlusQ96KN1
Domains : Interpro (EBI)FAM84B    LRAT-like_dom   
Domain families : Pfam (Sanger)LRAT (PF04970)   
Domain families : Pfam (NCBI)pfam04970   
Conserved Domain (NCBI)LRATD2
DMDM Disease mutations157638
Blocks (Seattle)LRATD2
SuperfamilyQ96KN1
Human Protein Atlas [tissue]ENSG00000168672-LRATD2 [tissue]
Peptide AtlasQ96KN1
HPRD11403
IPIIPI00064666   
Protein Interaction databases
DIP (DOE-UCLA)Q96KN1
IntAct (EBI)Q96KN1
FunCoupENSG00000168672
BioGRIDLRATD2
STRING (EMBL)LRATD2
ZODIACLRATD2
Ontologies - Pathways
QuickGOQ96KN1
Ontology : AmiGOprotein binding  cytoplasm  plasma membrane  
Ontology : EGO-EBIprotein binding  cytoplasm  plasma membrane  
NDEx NetworkLRATD2
Atlas of Cancer Signalling NetworkLRATD2
Wikipedia pathwaysLRATD2
Orthology - Evolution
OrthoDB157638
GeneTree (enSembl)ENSG00000168672
Phylogenetic Trees/Animal Genes : TreeFamLRATD2
HOGENOMQ96KN1
Homologs : HomoloGeneLRATD2
Homology/Alignments : Family Browser (UCSC)LRATD2
Gene fusions - Rearrangements
Fusion : QuiverLRATD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRATD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRATD2
dbVarLRATD2
ClinVarLRATD2
1000_GenomesLRATD2 
Exome Variant ServerLRATD2
ExAC (Exome Aggregation Consortium)ENSG00000168672
GNOMAD BrowserENSG00000168672
Varsome BrowserLRATD2
Genetic variants : HAPMAP157638
Genomic Variants (DGV)LRATD2 [DGVbeta]
DECIPHERLRATD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRATD2 
Mutations
ICGC Data PortalLRATD2 
TCGA Data PortalLRATD2 
Broad Tumor PortalLRATD2
OASIS PortalLRATD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRATD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRATD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRATD2
DgiDB (Drug Gene Interaction Database)LRATD2
DoCM (Curated mutations)LRATD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRATD2 (select a term)
intoGenLRATD2
Cancer3DLRATD2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609483   
Orphanet
DisGeNETLRATD2
MedgenLRATD2
Genetic Testing Registry LRATD2
NextProtQ96KN1 [Medical]
TSGene157638
GENETestsLRATD2
Target ValidationLRATD2
Huge Navigator LRATD2 [HugePedia]
snp3D : Map Gene to Disease157638
BioCentury BCIQLRATD2
ClinGenLRATD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157638
Chemical/Pharm GKB GenePA142671855
Clinical trialLRATD2
Miscellaneous
canSAR (ICR)LRATD2 (select the gene name)
DataMed IndexLRATD2
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRATD2
EVEXLRATD2
GoPubMedLRATD2
iHOPLRATD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu May 2 12:56:24 CEST 2019

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