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LRCH2 (leucine rich repeats and calponin homology domain containing 2)

Identity

Alias (NCBI)dA204F4.4
HGNC (Hugo) LRCH2
HGNC Alias symbKIAA1495
HGNC Previous nameleucine-rich repeats and calponin homology (CH) domain containing 2
LocusID (NCBI) 57631
Atlas_Id 68573
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 115110620 and ends at 115234072 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LRCH2   29292
Cards
Entrez_Gene (NCBI)LRCH2    leucine rich repeats and calponin homology domain containing 2
AliasesdA204F4.4
GeneCards (Weizmann)LRCH2
Ensembl hg19 (Hinxton)ENSG00000130224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130224 [Gene_View]  ENSG00000130224 [Sequence]  chrX:115110620-115234072 [Contig_View]  LRCH2 [Vega]
ICGC DataPortalENSG00000130224
TCGA cBioPortalLRCH2
AceView (NCBI)LRCH2
Genatlas (Paris)LRCH2
SOURCE (Princeton)LRCH2
Genetics Home Reference (NIH)LRCH2
Genomic and cartography
GoldenPath hg38 (UCSC)LRCH2  -     chrX:115110620-115234072 -  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRCH2  -     Xq23   [Description]    (hg19-Feb_2009)
GoldenPathLRCH2 - Xq23 [CytoView hg19]  LRCH2 - Xq23 [CytoView hg38]
ImmunoBaseENSG00000130224
genome Data Viewer NCBILRCH2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB040928 AK022128 BC042004 BC125223 BC125224
RefSeq transcript (Entrez)NM_001243963 NM_020871
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRCH2
Alternative Splicing GalleryENSG00000130224
Gene ExpressionLRCH2 [ NCBI-GEO ]   LRCH2 [ EBI - ARRAY_EXPRESS ]   LRCH2 [ SEEK ]   LRCH2 [ MEM ]
Gene Expression Viewer (FireBrowse)LRCH2 [ Firebrowse - Broad ]
GenevisibleExpression of LRCH2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57631
GTEX Portal (Tissue expression)LRCH2
Human Protein AtlasENSG00000130224-LRCH2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VUJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VUJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VUJ6
Splice isoforms : SwissVarQ5VUJ6
PhosPhoSitePlusQ5VUJ6
Domaine pattern : Prosite (Expaxy)CH (PS50021)    LRR (PS51450)   
Domains : Interpro (EBI)CH-domain    CH_dom_sf    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR_dom_sf   
Domain families : Pfam (Sanger)CH (PF00307)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00307    pfam13855   
Domain families : Smart (EMBL)CH (SM00033)  LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRCH2
Blocks (Seattle)LRCH2
SuperfamilyQ5VUJ6
Human Protein Atlas [tissue]ENSG00000130224-LRCH2 [tissue]
Peptide AtlasQ5VUJ6
HPRD06602
IPIIPI00745038   IPI00843955   IPI01015065   
Protein Interaction databases
DIP (DOE-UCLA)Q5VUJ6
IntAct (EBI)Q5VUJ6
BioGRIDLRCH2
STRING (EMBL)LRCH2
ZODIACLRCH2
Ontologies - Pathways
QuickGOQ5VUJ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRCH2
Atlas of Cancer Signalling NetworkLRCH2
Wikipedia pathwaysLRCH2
Orthology - Evolution
OrthoDB57631
GeneTree (enSembl)ENSG00000130224
Phylogenetic Trees/Animal Genes : TreeFamLRCH2
HOGENOMQ5VUJ6
Homologs : HomoloGeneLRCH2
Homology/Alignments : Family Browser (UCSC)LRCH2
Gene fusions - Rearrangements
Fusion : QuiverLRCH2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRCH2 [hg38]
dbVarLRCH2
ClinVarLRCH2
MonarchLRCH2
1000_GenomesLRCH2 
Exome Variant ServerLRCH2
GNOMAD BrowserENSG00000130224
Varsome BrowserLRCH2
Genomic Variants (DGV)LRCH2 [DGVbeta]
DECIPHERLRCH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRCH2 
Mutations
ICGC Data PortalLRCH2 
TCGA Data PortalLRCH2 
Broad Tumor PortalLRCH2
OASIS PortalLRCH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRCH2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLRCH2
Mutations and Diseases : HGMDLRCH2
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch LRCH2
DgiDB (Drug Gene Interaction Database)LRCH2
DoCM (Curated mutations)LRCH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRCH2 (select a term)
intoGenLRCH2
Cancer3DLRCH2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRCH2
MedgenLRCH2
Genetic Testing Registry LRCH2
NextProtQ5VUJ6 [Medical]
GENETestsLRCH2
Target ValidationLRCH2
Huge Navigator LRCH2 [HugePedia]
ClinGenLRCH2
Clinical trials, drugs, therapy
MyCancerGenomeLRCH2
Protein Interactions : CTD
Pharm GKB GenePA134890613
Clinical trialLRCH2
Miscellaneous
canSAR (ICR)LRCH2 (select the gene name)
HarmonizomeLRCH2
DataMed IndexLRCH2
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRCH2
EVEXLRCH2
GoPubMedLRCH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:12:00 CET 2020
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