Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LRCOL1 (leucine rich colipase-like 1)

Identity

Other alias-
HGNC (Hugo) LRCOL1
LocusID (NCBI) 100507055
Atlas_Id 68575
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 133179736 and ends at 133187037 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRCOL1   44160
Cards
Entrez_Gene (NCBI)LRCOL1  100507055  leucine rich colipase-like 1
Aliases
GeneCards (Weizmann)LRCOL1
Ensembl hg19 (Hinxton)ENSG00000204583 [Gene_View]  chr12:133179736-133187037 [Contig_View]  LRCOL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204583 [Gene_View]  chr12:133179736-133187037 [Contig_View]  LRCOL1 [Vega]
ICGC DataPortalENSG00000204583
TCGA cBioPortalLRCOL1
AceView (NCBI)LRCOL1
Genatlas (Paris)LRCOL1
WikiGenes100507055
SOURCE (Princeton)LRCOL1
Genetics Home Reference (NIH)LRCOL1
Genomic and cartography
GoldenPath hg19 (UCSC)LRCOL1  -     chr12:133179736-133187037 -  12q24.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRCOL1  -     12q24.33   [Description]    (hg38-Dec_2013)
EnsemblLRCOL1 - 12q24.33 [CytoView hg19]  LRCOL1 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBILRCOL1 [Mapview hg19]  LRCOL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AV653338 BX282338 DB344052 JQ012741 JQ012742
RefSeq transcript (Entrez)NM_001195520
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_024477 NW_004929387
Consensus coding sequences : CCDS (NCBI)LRCOL1
Cluster EST : UnigeneHs.282811 [ NCBI ]
CGAP (NCI)Hs.282811
Alternative Splicing GalleryENSG00000204583
Gene ExpressionLRCOL1 [ NCBI-GEO ]   LRCOL1 [ EBI - ARRAY_EXPRESS ]   LRCOL1 [ SEEK ]   LRCOL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LRCOL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507055
GTEX Portal (Tissue expression)LRCOL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCL2
Splice isoforms : SwissVarA6NCL2
PhosPhoSitePlusA6NCL2
Domains : Interpro (EBI)Colipase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRCOL1
DMDM Disease mutations100507055
Blocks (Seattle)LRCOL1
SuperfamilyA6NCL2
Human Protein AtlasENSG00000204583
Peptide AtlasA6NCL2
IPIIPI00740275   
Protein Interaction databases
DIP (DOE-UCLA)A6NCL2
IntAct (EBI)A6NCL2
FunCoupENSG00000204583
BioGRIDLRCOL1
STRING (EMBL)LRCOL1
ZODIACLRCOL1
Ontologies - Pathways
QuickGOA6NCL2
Ontology : AmiGOextracellular region  digestion  enzyme activator activity  lipid catabolic process  positive regulation of catalytic activity  
Ontology : EGO-EBIextracellular region  digestion  enzyme activator activity  lipid catabolic process  positive regulation of catalytic activity  
NDEx NetworkLRCOL1
Atlas of Cancer Signalling NetworkLRCOL1
Wikipedia pathwaysLRCOL1
Orthology - Evolution
OrthoDB100507055
GeneTree (enSembl)ENSG00000204583
Phylogenetic Trees/Animal Genes : TreeFamLRCOL1
HOVERGENA6NCL2
HOGENOMA6NCL2
Homologs : HomoloGeneLRCOL1
Homology/Alignments : Family Browser (UCSC)LRCOL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRCOL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRCOL1
dbVarLRCOL1
ClinVarLRCOL1
1000_GenomesLRCOL1 
Exome Variant ServerLRCOL1
ExAC (Exome Aggregation Consortium)LRCOL1 (select the gene name)
Genetic variants : HAPMAP100507055
Genomic Variants (DGV)LRCOL1 [DGVbeta]
DECIPHER (Syndromes)12:133179736-133187037  ENSG00000204583
CONAN: Copy Number AnalysisLRCOL1 
Mutations
ICGC Data PortalLRCOL1 
TCGA Data PortalLRCOL1 
Broad Tumor PortalLRCOL1
OASIS PortalLRCOL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLRCOL1
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRCOL1
DgiDB (Drug Gene Interaction Database)LRCOL1
DoCM (Curated mutations)LRCOL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRCOL1 (select a term)
intoGenLRCOL1
Cancer3DLRCOL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRCOL1
Genetic Testing Registry LRCOL1
NextProtA6NCL2 [Medical]
TSGene100507055
GENETestsLRCOL1
Huge Navigator LRCOL1 [HugePedia]
snp3D : Map Gene to Disease100507055
BioCentury BCIQLRCOL1
ClinGenLRCOL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507055
Clinical trialLRCOL1
Miscellaneous
canSAR (ICR)LRCOL1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRCOL1
EVEXLRCOL1
GoPubMedLRCOL1
iHOPLRCOL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:26:56 CET 2017

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