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LRFN1 (leucine rich repeat and fibronectin type III domain containing 1)

Identity

Alias_symbol (synonym)KIAA1484
SALM2
Other alias
HGNC (Hugo) LRFN1
LocusID (NCBI) 57622
Atlas_Id 68576
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39306817 and ends at 39315336 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CELF2 (10p14) / LRFN1 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRFN1   29290
Cards
Entrez_Gene (NCBI)LRFN1  57622  leucine rich repeat and fibronectin type III domain containing 1
AliasesSALM2
GeneCards (Weizmann)LRFN1
Ensembl hg19 (Hinxton)ENSG00000128011 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128011 [Gene_View]  chr19:39306817-39315336 [Contig_View]  LRFN1 [Vega]
ICGC DataPortalENSG00000128011
TCGA cBioPortalLRFN1
AceView (NCBI)LRFN1
Genatlas (Paris)LRFN1
WikiGenes57622
SOURCE (Princeton)LRFN1
Genetics Home Reference (NIH)LRFN1
Genomic and cartography
GoldenPath hg38 (UCSC)LRFN1  -     chr19:39306817-39315336 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRFN1  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblLRFN1 - 19q13.2 [CytoView hg19]  LRFN1 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBILRFN1 [Mapview hg19]  LRFN1 [Mapview hg38]
OMIM612807   
Gene and transcription
Genbank (Entrez)AB040917 BC014678 BC025310 BC040681
RefSeq transcript (Entrez)NM_020862
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRFN1
Cluster EST : UnigeneHs.97860 [ NCBI ]
CGAP (NCI)Hs.97860
Alternative Splicing GalleryENSG00000128011
Gene ExpressionLRFN1 [ NCBI-GEO ]   LRFN1 [ EBI - ARRAY_EXPRESS ]   LRFN1 [ SEEK ]   LRFN1 [ MEM ]
Gene Expression Viewer (FireBrowse)LRFN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57622
GTEX Portal (Tissue expression)LRFN1
Human Protein AtlasENSG00000128011-LRFN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P244   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P244  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P244
Splice isoforms : SwissVarQ9P244
PhosPhoSitePlusQ9P244
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)    LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00041    pfam07679    pfam13855   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)LRFN1
DMDM Disease mutations57622
Blocks (Seattle)LRFN1
SuperfamilyQ9P244
Human Protein Atlas [tissue]ENSG00000128011-LRFN1 [tissue]
Peptide AtlasQ9P244
IPIIPI00793456   
Protein Interaction databases
DIP (DOE-UCLA)Q9P244
IntAct (EBI)Q9P244
FunCoupENSG00000128011
BioGRIDLRFN1
STRING (EMBL)LRFN1
ZODIACLRFN1
Ontologies - Pathways
QuickGOQ9P244
Ontology : AmiGOproteinaceous extracellular matrix  extracellular space  plasma membrane  axonogenesis  cell surface  postsynaptic density  integral component of membrane  cell junction  postsynaptic membrane  
Ontology : EGO-EBIproteinaceous extracellular matrix  extracellular space  plasma membrane  axonogenesis  cell surface  postsynaptic density  integral component of membrane  cell junction  postsynaptic membrane  
NDEx NetworkLRFN1
Atlas of Cancer Signalling NetworkLRFN1
Wikipedia pathwaysLRFN1
Orthology - Evolution
OrthoDB57622
GeneTree (enSembl)ENSG00000128011
Phylogenetic Trees/Animal Genes : TreeFamLRFN1
HOVERGENQ9P244
HOGENOMQ9P244
Homologs : HomoloGeneLRFN1
Homology/Alignments : Family Browser (UCSC)LRFN1
Gene fusions - Rearrangements
Tumor Fusion PortalLRFN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRFN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRFN1
dbVarLRFN1
ClinVarLRFN1
1000_GenomesLRFN1 
Exome Variant ServerLRFN1
ExAC (Exome Aggregation Consortium)ENSG00000128011
GNOMAD BrowserENSG00000128011
Genetic variants : HAPMAP57622
Genomic Variants (DGV)LRFN1 [DGVbeta]
DECIPHERLRFN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRFN1 
Mutations
ICGC Data PortalLRFN1 
TCGA Data PortalLRFN1 
Broad Tumor PortalLRFN1
OASIS PortalLRFN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRFN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRFN1
BioMutasearch LRFN1
DgiDB (Drug Gene Interaction Database)LRFN1
DoCM (Curated mutations)LRFN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRFN1 (select a term)
intoGenLRFN1
Cancer3DLRFN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612807   
Orphanet
DisGeNETLRFN1
MedgenLRFN1
Genetic Testing Registry LRFN1
NextProtQ9P244 [Medical]
TSGene57622
GENETestsLRFN1
Target ValidationLRFN1
Huge Navigator LRFN1 [HugePedia]
snp3D : Map Gene to Disease57622
BioCentury BCIQLRFN1
ClinGenLRFN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57622
Chemical/Pharm GKB GenePA134871732
Clinical trialLRFN1
Miscellaneous
canSAR (ICR)LRFN1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRFN1
EVEXLRFN1
GoPubMedLRFN1
iHOPLRFN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:59 CET 2017

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