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LRFN3 (leucine rich repeat and fibronectin type III domain containing 3)

Identity

Alias_symbol (synonym)MGC2656
SALM4
FIGLER1
Other alias
HGNC (Hugo) LRFN3
LocusID (NCBI) 79414
Atlas_Id 68578
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36428022 and ends at 36436097 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
POLR2F (22q13.1) / LRFN3 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRFN3   28370
Cards
Entrez_Gene (NCBI)LRFN3  79414  leucine rich repeat and fibronectin type III domain containing 3
AliasesFIGLER1; SALM4
GeneCards (Weizmann)LRFN3
Ensembl hg19 (Hinxton)ENSG00000126243 [Gene_View]  chr19:36428022-36436097 [Contig_View]  LRFN3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126243 [Gene_View]  chr19:36428022-36436097 [Contig_View]  LRFN3 [Vega]
ICGC DataPortalENSG00000126243
TCGA cBioPortalLRFN3
AceView (NCBI)LRFN3
Genatlas (Paris)LRFN3
WikiGenes79414
SOURCE (Princeton)LRFN3
Genetics Home Reference (NIH)LRFN3
Genomic and cartography
GoldenPath hg19 (UCSC)LRFN3  -     chr19:36428022-36436097 +  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRFN3  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblLRFN3 - 19q13.12 [CytoView hg19]  LRFN3 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBILRFN3 [Mapview hg19]  LRFN3 [Mapview hg38]
OMIM612809   
Gene and transcription
Genbank (Entrez)AK172754 AK313579 AY358127 BC003578 DQ893672
RefSeq transcript (Entrez)NM_024509
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)LRFN3
Cluster EST : UnigeneHs.143792 [ NCBI ]
CGAP (NCI)Hs.143792
Alternative Splicing GalleryENSG00000126243
Gene ExpressionLRFN3 [ NCBI-GEO ]   LRFN3 [ EBI - ARRAY_EXPRESS ]   LRFN3 [ SEEK ]   LRFN3 [ MEM ]
Gene Expression Viewer (FireBrowse)LRFN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79414
GTEX Portal (Tissue expression)LRFN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTN0
Splice isoforms : SwissVarQ9BTN0
PhosPhoSitePlusQ9BTN0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub2    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00041    pfam07679    pfam13855   
Domain families : Smart (EMBL)FN3 (SM00060)  IGc2 (SM00408)  LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)LRFN3
DMDM Disease mutations79414
Blocks (Seattle)LRFN3
SuperfamilyQ9BTN0
Human Protein AtlasENSG00000126243
Peptide AtlasQ9BTN0
HPRD14309
IPIIPI00001577   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTN0
IntAct (EBI)Q9BTN0
FunCoupENSG00000126243
BioGRIDLRFN3
STRING (EMBL)LRFN3
ZODIACLRFN3
Ontologies - Pathways
QuickGOQ9BTN0
Ontology : AmiGOcell adhesion  integral component of membrane  cell junction  axon  dendrite  presynaptic membrane  postsynaptic membrane  
Ontology : EGO-EBIcell adhesion  integral component of membrane  cell junction  axon  dendrite  presynaptic membrane  postsynaptic membrane  
NDEx NetworkLRFN3
Atlas of Cancer Signalling NetworkLRFN3
Wikipedia pathwaysLRFN3
Orthology - Evolution
OrthoDB79414
GeneTree (enSembl)ENSG00000126243
Phylogenetic Trees/Animal Genes : TreeFamLRFN3
HOVERGENQ9BTN0
HOGENOMQ9BTN0
Homologs : HomoloGeneLRFN3
Homology/Alignments : Family Browser (UCSC)LRFN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRFN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRFN3
dbVarLRFN3
ClinVarLRFN3
1000_GenomesLRFN3 
Exome Variant ServerLRFN3
ExAC (Exome Aggregation Consortium)LRFN3 (select the gene name)
Genetic variants : HAPMAP79414
Genomic Variants (DGV)LRFN3 [DGVbeta]
DECIPHER (Syndromes)19:36428022-36436097  ENSG00000126243
CONAN: Copy Number AnalysisLRFN3 
Mutations
ICGC Data PortalLRFN3 
TCGA Data PortalLRFN3 
Broad Tumor PortalLRFN3
OASIS PortalLRFN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRFN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRFN3
BioMutasearch LRFN3
DgiDB (Drug Gene Interaction Database)LRFN3
DoCM (Curated mutations)LRFN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRFN3 (select a term)
intoGenLRFN3
Cancer3DLRFN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612809   
Orphanet
MedgenLRFN3
Genetic Testing Registry LRFN3
NextProtQ9BTN0 [Medical]
TSGene79414
GENETestsLRFN3
Huge Navigator LRFN3 [HugePedia]
snp3D : Map Gene to Disease79414
BioCentury BCIQLRFN3
ClinGenLRFN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79414
Chemical/Pharm GKB GenePA134880779
Clinical trialLRFN3
Miscellaneous
canSAR (ICR)LRFN3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRFN3
EVEXLRFN3
GoPubMedLRFN3
iHOPLRFN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:26:56 CET 2017

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