Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LRFN5 (leucine rich repeat and fibronectin type III domain containing 5)

Identity

Alias_namesC14orf146
chromosome 14 open reading frame 146
Alias_symbol (synonym)FIGLER8
SALM5
Other alias
HGNC (Hugo) LRFN5
LocusID (NCBI) 145581
Atlas_Id 68580
Location 14q21.1  [Link to chromosome band 14q21]
Location_base_pair Starts at 41606856 and ends at 41904551 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRFN5 (14q21.1) / CERS6 (2q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRFN5   20360
Cards
Entrez_Gene (NCBI)LRFN5  145581  leucine rich repeat and fibronectin type III domain containing 5
AliasesC14orf146; FIGLER8; SALM5
GeneCards (Weizmann)LRFN5
Ensembl hg19 (Hinxton)ENSG00000165379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165379 [Gene_View]  chr14:41606856-41904551 [Contig_View]  LRFN5 [Vega]
ICGC DataPortalENSG00000165379
TCGA cBioPortalLRFN5
AceView (NCBI)LRFN5
Genatlas (Paris)LRFN5
WikiGenes145581
SOURCE (Princeton)LRFN5
Genetics Home Reference (NIH)LRFN5
Genomic and cartography
GoldenPath hg38 (UCSC)LRFN5  -     chr14:41606856-41904551 +  14q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRFN5  -     14q21.1   [Description]    (hg19-Feb_2009)
EnsemblLRFN5 - 14q21.1 [CytoView hg19]  LRFN5 - 14q21.1 [CytoView hg38]
Mapping of homologs : NCBILRFN5 [Mapview hg19]  LRFN5 [Mapview hg38]
OMIM612811   
Gene and transcription
Genbank (Entrez)AK055365 AK096627 AK299632 AL832129 AW013887
RefSeq transcript (Entrez)NM_001330106 NM_001346173 NM_001346175 NM_152447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRFN5
Cluster EST : UnigeneHs.136893 [ NCBI ]
CGAP (NCI)Hs.136893
Alternative Splicing GalleryENSG00000165379
Gene ExpressionLRFN5 [ NCBI-GEO ]   LRFN5 [ EBI - ARRAY_EXPRESS ]   LRFN5 [ SEEK ]   LRFN5 [ MEM ]
Gene Expression Viewer (FireBrowse)LRFN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145581
GTEX Portal (Tissue expression)LRFN5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NI6
Splice isoforms : SwissVarQ96NI6
PhosPhoSitePlusQ96NI6
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    LRR (PS51450)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    Lrfn5    LRR_5   
Domain families : Pfam (Sanger)I-set (PF07679)    LRR_5 (PF13306)   
Domain families : Pfam (NCBI)pfam07679    pfam13306   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRFN5
DMDM Disease mutations145581
Blocks (Seattle)LRFN5
SuperfamilyQ96NI6
Human Protein AtlasENSG00000165379
Peptide AtlasQ96NI6
HPRD17445
IPIIPI00396961   IPI01025136   IPI01024892   
Protein Interaction databases
DIP (DOE-UCLA)Q96NI6
IntAct (EBI)Q96NI6
FunCoupENSG00000165379
BioGRIDLRFN5
STRING (EMBL)LRFN5
ZODIACLRFN5
Ontologies - Pathways
QuickGOQ96NI6
Ontology : AmiGOproteinaceous extracellular matrix  extracellular space  axonogenesis  cell surface  integral component of membrane  
Ontology : EGO-EBIproteinaceous extracellular matrix  extracellular space  axonogenesis  cell surface  integral component of membrane  
NDEx NetworkLRFN5
Atlas of Cancer Signalling NetworkLRFN5
Wikipedia pathwaysLRFN5
Orthology - Evolution
OrthoDB145581
GeneTree (enSembl)ENSG00000165379
Phylogenetic Trees/Animal Genes : TreeFamLRFN5
HOVERGENQ96NI6
HOGENOMQ96NI6
Homologs : HomoloGeneLRFN5
Homology/Alignments : Family Browser (UCSC)LRFN5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRFN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRFN5
dbVarLRFN5
ClinVarLRFN5
1000_GenomesLRFN5 
Exome Variant ServerLRFN5
ExAC (Exome Aggregation Consortium)LRFN5 (select the gene name)
Genetic variants : HAPMAP145581
Genomic Variants (DGV)LRFN5 [DGVbeta]
DECIPHERLRFN5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRFN5 
Mutations
ICGC Data PortalLRFN5 
TCGA Data PortalLRFN5 
Broad Tumor PortalLRFN5
OASIS PortalLRFN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRFN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRFN5
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRFN5
DgiDB (Drug Gene Interaction Database)LRFN5
DoCM (Curated mutations)LRFN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRFN5 (select a term)
intoGenLRFN5
Cancer3DLRFN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612811   
Orphanet
MedgenLRFN5
Genetic Testing Registry LRFN5
NextProtQ96NI6 [Medical]
TSGene145581
GENETestsLRFN5
Target ValidationLRFN5
Huge Navigator LRFN5 [HugePedia]
snp3D : Map Gene to Disease145581
BioCentury BCIQLRFN5
ClinGenLRFN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145581
Chemical/Pharm GKB GenePA134888453
Clinical trialLRFN5
Miscellaneous
canSAR (ICR)LRFN5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRFN5
EVEXLRFN5
GoPubMedLRFN5
iHOPLRFN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:24:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.