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LRIF1 (ligand dependent nuclear receptor interacting factor 1)

Identity

Alias_namesC1orf103
chromosome 1 open reading frame 103
Alias_symbol (synonym)RIF1
FLJ11269
Other alias
HGNC (Hugo) LRIF1
LocusID (NCBI) 55791
Atlas_Id 68582
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 110947190 and ends at 110963944 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LRIF1 (1p13.3) / SPOP (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRIF1   30299
Cards
Entrez_Gene (NCBI)LRIF1  55791  ligand dependent nuclear receptor interacting factor 1
AliasesC1orf103; RIF1
GeneCards (Weizmann)LRIF1
Ensembl hg19 (Hinxton)ENSG00000121931 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121931 [Gene_View]  chr1:110947190-110963944 [Contig_View]  LRIF1 [Vega]
ICGC DataPortalENSG00000121931
TCGA cBioPortalLRIF1
AceView (NCBI)LRIF1
Genatlas (Paris)LRIF1
WikiGenes55791
SOURCE (Princeton)LRIF1
Genetics Home Reference (NIH)LRIF1
Genomic and cartography
GoldenPath hg38 (UCSC)LRIF1  -     chr1:110947190-110963944 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRIF1  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblLRIF1 - 1p13.3 [CytoView hg19]  LRIF1 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBILRIF1 [Mapview hg19]  LRIF1 [Mapview hg38]
OMIM615354   
Gene and transcription
Genbank (Entrez)AK001826 AK002131 AL834466 AY190122 BC008115
RefSeq transcript (Entrez)NM_001006945 NM_018372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRIF1
Cluster EST : UnigeneHs.25245 [ NCBI ]
CGAP (NCI)Hs.25245
Alternative Splicing GalleryENSG00000121931
Gene ExpressionLRIF1 [ NCBI-GEO ]   LRIF1 [ EBI - ARRAY_EXPRESS ]   LRIF1 [ SEEK ]   LRIF1 [ MEM ]
Gene Expression Viewer (FireBrowse)LRIF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55791
GTEX Portal (Tissue expression)LRIF1
Human Protein AtlasENSG00000121931-LRIF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T3J3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T3J3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T3J3
Splice isoforms : SwissVarQ5T3J3
PhosPhoSitePlusQ5T3J3
Domains : Interpro (EBI)LRIF1   
Domain families : Pfam (Sanger)LRIF1 (PF15741)   
Domain families : Pfam (NCBI)pfam15741   
Conserved Domain (NCBI)LRIF1
DMDM Disease mutations55791
Blocks (Seattle)LRIF1
SuperfamilyQ5T3J3
Human Protein Atlas [tissue]ENSG00000121931-LRIF1 [tissue]
Peptide AtlasQ5T3J3
HPRD17975
IPIIPI00479789   IPI00296858   
Protein Interaction databases
DIP (DOE-UCLA)Q5T3J3
IntAct (EBI)Q5T3J3
FunCoupENSG00000121931
BioGRIDLRIF1
STRING (EMBL)LRIF1
ZODIACLRIF1
Ontologies - Pathways
QuickGOQ5T3J3
Ontology : AmiGOnuclear chromosome, telomeric region  protein binding  nucleus  microtubule organizing center  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear matrix  retinoic acid receptor binding  
Ontology : EGO-EBInuclear chromosome, telomeric region  protein binding  nucleus  microtubule organizing center  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear matrix  retinoic acid receptor binding  
NDEx NetworkLRIF1
Atlas of Cancer Signalling NetworkLRIF1
Wikipedia pathwaysLRIF1
Orthology - Evolution
OrthoDB55791
GeneTree (enSembl)ENSG00000121931
Phylogenetic Trees/Animal Genes : TreeFamLRIF1
HOVERGENQ5T3J3
HOGENOMQ5T3J3
Homologs : HomoloGeneLRIF1
Homology/Alignments : Family Browser (UCSC)LRIF1
Gene fusions - Rearrangements
Fusion: Tumor Portal LRIF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRIF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRIF1
dbVarLRIF1
ClinVarLRIF1
1000_GenomesLRIF1 
Exome Variant ServerLRIF1
ExAC (Exome Aggregation Consortium)ENSG00000121931
GNOMAD BrowserENSG00000121931
Genetic variants : HAPMAP55791
Genomic Variants (DGV)LRIF1 [DGVbeta]
DECIPHERLRIF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRIF1 
Mutations
ICGC Data PortalLRIF1 
TCGA Data PortalLRIF1 
Broad Tumor PortalLRIF1
OASIS PortalLRIF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRIF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRIF1
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRIF1
DgiDB (Drug Gene Interaction Database)LRIF1
DoCM (Curated mutations)LRIF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRIF1 (select a term)
intoGenLRIF1
Cancer3DLRIF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615354   
Orphanet
MedgenLRIF1
Genetic Testing Registry LRIF1
NextProtQ5T3J3 [Medical]
TSGene55791
GENETestsLRIF1
Target ValidationLRIF1
Huge Navigator LRIF1 [HugePedia]
snp3D : Map Gene to Disease55791
BioCentury BCIQLRIF1
ClinGenLRIF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55791
Chemical/Pharm GKB GenePA142672487
Clinical trialLRIF1
Miscellaneous
canSAR (ICR)LRIF1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRIF1
EVEXLRIF1
GoPubMedLRIF1
iHOPLRIF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:11:31 CET 2017

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