Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LRIT1 (leucine rich repeat, Ig-like and transmembrane domains 1)

Identity

Alias_namesLRRC21
leucine rich repeat containing 21
Alias_symbol (synonym)PAL
DKFZP434K091
FIGLER9
Other alias
HGNC (Hugo) LRIT1
LocusID (NCBI) 26103
Atlas_Id 68583
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84231520 and ends at 84241461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRIT1   23404
Cards
Entrez_Gene (NCBI)LRIT1  26103  leucine rich repeat, Ig-like and transmembrane domains 1
AliasesFIGLER9; LRRC21; PAL
GeneCards (Weizmann)LRIT1
Ensembl hg19 (Hinxton)ENSG00000148602 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148602 [Gene_View]  chr10:84231520-84241461 [Contig_View]  LRIT1 [Vega]
ICGC DataPortalENSG00000148602
TCGA cBioPortalLRIT1
AceView (NCBI)LRIT1
Genatlas (Paris)LRIT1
WikiGenes26103
SOURCE (Princeton)LRIT1
Genetics Home Reference (NIH)LRIT1
Genomic and cartography
GoldenPath hg38 (UCSC)LRIT1  -     chr10:84231520-84241461 -  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRIT1  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblLRIT1 - 10q23.1 [CytoView hg19]  LRIT1 - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBILRIT1 [Mapview hg19]  LRIT1 [Mapview hg38]
OMIM616103   
Gene and transcription
Genbank (Entrez)AB031547 AL080175 BC140296 DQ426881 DQ426882
RefSeq transcript (Entrez)NM_015613
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRIT1
Cluster EST : UnigeneHs.226000 [ NCBI ]
CGAP (NCI)Hs.226000
Alternative Splicing GalleryENSG00000148602
Gene ExpressionLRIT1 [ NCBI-GEO ]   LRIT1 [ EBI - ARRAY_EXPRESS ]   LRIT1 [ SEEK ]   LRIT1 [ MEM ]
Gene Expression Viewer (FireBrowse)LRIT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26103
GTEX Portal (Tissue expression)LRIT1
Human Prgtein$ATlasENSG00000148602-LRIT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2V4
Splice isoforms : SwissVarQ9P2V4
PhosPhoSitePlusQ9P2V4
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)    LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00041    pfam07679    pfam13855   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)LRIT1
DMDM Disease mutations26103
Blocks (Seattle)LRIT1
SuperfamilyQ9P2V4
Human Protein Atlas [tissue]ENSG00000148602-LRIT1 [tissue]
Peptide AtlasQ9P2V4
HPRD14315
IPIIPI00024059   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2V4
IntAct (EBI)Q9P2V4
FunCoupENSG00000148602
BioGRIDLRIT1
STRING (EMBL)LRIT1
ZODIACLRIT1
Ontologies - Pathways
QuickGOQ9P2V4
Ontology : AmiGOmolecular_function  biological_process  integral component of endoplasmic reticulum membrane  
Ontology : EGO-EBImolecular_function  biological_process  integral component of endoplasmic reticulum membrane  
NDEx NetworkLRIT1
Atlas of Cancer Signalling NetworkLRIT1
Wikipedia pathwaysLRIT1
Orthology - Evolution
OrthoDB26103
GeneTree (enSembl)ENSG00000148602
Phylogenetic Trees/Animal Genes : TreeFamLRIT1
HOVERGENQ9P2V4
HOGENOMQ9P2V4
Homologs : HomoloGeneLRIT1
Homology/Alignments : Family Browser (UCSC)LRIT1
Gene fusions - Rearrangements
Fusion: Tumor Portal LRIT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRIT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRIT1
dbVarLRIT1
ClinVarLRIT1
1000_GenomesLRIT1 
Exome Variant ServerLRIT1
ExAC (Exome Aggregation Consortium)ENSG00000148602
GNOMAD BrowserENSG00000148602
Genetic variants : HAPMAP26103
Genomic Variants (DGV)LRIT1 [DGVbeta]
DECIPHERLRIT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRIT1 
Mutations
ICGC Data PortalLRIT1 
TCGA Data PortalLRIT1 
Broad Tumor PortalLRIT1
OASIS PortalLRIT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRIT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRIT1
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRIT1
DgiDB (Drug Gene Interaction Database)LRIT1
DoCM (Curated mutations)LRIT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRIT1 (select a term)
intoGenLRIT1
Cancer3DLRIT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616103   
Orphanet
MedgenLRIT1
Genetic Testing Registry LRIT1
NextProtQ9P2V4 [Medical]
TSGene26103
GENETestsLRIT1
Target ValidationLRIT1
Huge Navigator LRIT1 [HugePedia]
snp3D : Map Gene to Disease26103
BioCentury BCIQLRIT1
ClinGenLRIT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26103
Chemical/Pharm GKB GenePA162394331
Clinical trialLRIT1
Miscellaneous
canSAR (ICR)LRIT1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRIT1
EVEXLRIT1
GoPubMedLRIT1
iHOPLRIT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:11:31 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.