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LRIT2 (leucine rich repeat, Ig-like and transmembrane domains 2)

Identity

Alias_namesLRRC22
leucine rich repeat containing 22
Alias_symbol (synonym)AC022389.4
Other alias
HGNC (Hugo) LRIT2
LocusID (NCBI) 340745
Atlas_Id 68584
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84220491 and ends at 84225589 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRIT2   23443
Cards
Entrez_Gene (NCBI)LRIT2  340745  leucine rich repeat, Ig-like and transmembrane domains 2
AliasesLRRC22
GeneCards (Weizmann)LRIT2
Ensembl hg19 (Hinxton)ENSG00000204033 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204033 [Gene_View]  chr10:84220491-84225589 [Contig_View]  LRIT2 [Vega]
ICGC DataPortalENSG00000204033
TCGA cBioPortalLRIT2
AceView (NCBI)LRIT2
Genatlas (Paris)LRIT2
WikiGenes340745
SOURCE (Princeton)LRIT2
Genetics Home Reference (NIH)LRIT2
Genomic and cartography
GoldenPath hg38 (UCSC)LRIT2  -     chr10:84220491-84225589 -  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRIT2  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblLRIT2 - 10q23.1 [CytoView hg19]  LRIT2 - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBILRIT2 [Mapview hg19]  LRIT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140765 BC144475 BX648524
RefSeq transcript (Entrez)NM_001017924 NM_001284223
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRIT2
Cluster EST : UnigeneHs.450425 [ NCBI ]
CGAP (NCI)Hs.450425
Alternative Splicing GalleryENSG00000204033
Gene ExpressionLRIT2 [ NCBI-GEO ]   LRIT2 [ EBI - ARRAY_EXPRESS ]   LRIT2 [ SEEK ]   LRIT2 [ MEM ]
Gene Expression Viewer (FireBrowse)LRIT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340745
GTEX Portal (Tissue expression)LRIT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDA9
Splice isoforms : SwissVarA6NDA9
PhosPhoSitePlusA6NDA9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    FN3_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    Prtase_inh_Kunz-CS   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)LRIT2
DMDM Disease mutations340745
Blocks (Seattle)LRIT2
SuperfamilyA6NDA9
Human Protein AtlasENSG00000204033
Peptide AtlasA6NDA9
HPRD18595
IPIIPI01015843   IPI00259519   
Protein Interaction databases
DIP (DOE-UCLA)A6NDA9
IntAct (EBI)A6NDA9
FunCoupENSG00000204033
BioGRIDLRIT2
STRING (EMBL)LRIT2
ZODIACLRIT2
Ontologies - Pathways
QuickGOA6NDA9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLRIT2
Atlas of Cancer Signalling NetworkLRIT2
Wikipedia pathwaysLRIT2
Orthology - Evolution
OrthoDB340745
GeneTree (enSembl)ENSG00000204033
Phylogenetic Trees/Animal Genes : TreeFamLRIT2
HOVERGENA6NDA9
HOGENOMA6NDA9
Homologs : HomoloGeneLRIT2
Homology/Alignments : Family Browser (UCSC)LRIT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRIT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRIT2
dbVarLRIT2
ClinVarLRIT2
1000_GenomesLRIT2 
Exome Variant ServerLRIT2
ExAC (Exome Aggregation Consortium)LRIT2 (select the gene name)
Genetic variants : HAPMAP340745
Genomic Variants (DGV)LRIT2 [DGVbeta]
DECIPHERLRIT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRIT2 
Mutations
ICGC Data PortalLRIT2 
TCGA Data PortalLRIT2 
Broad Tumor PortalLRIT2
OASIS PortalLRIT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRIT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRIT2
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRIT2
DgiDB (Drug Gene Interaction Database)LRIT2
DoCM (Curated mutations)LRIT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRIT2 (select a term)
intoGenLRIT2
Cancer3DLRIT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRIT2
Genetic Testing Registry LRIT2
NextProtA6NDA9 [Medical]
TSGene340745
GENETestsLRIT2
Target ValidationLRIT2
Huge Navigator LRIT2 [HugePedia]
snp3D : Map Gene to Disease340745
BioCentury BCIQLRIT2
ClinGenLRIT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340745
Chemical/Pharm GKB GenePA162394344
Clinical trialLRIT2
Miscellaneous
canSAR (ICR)LRIT2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRIT2
EVEXLRIT2
GoPubMedLRIT2
iHOPLRIT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:25 CEST 2017

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