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LRIT3 (leucine rich repeat, Ig-like and transmembrane domains 3)

Identity

Alias_symbol (synonym)FLJ44691
FIGLER4
CSNB1F
Other alias
HGNC (Hugo) LRIT3
LocusID (NCBI) 345193
Atlas_Id 68585
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 109848184 and ends at 109872315 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRIT3   24783
Cards
Entrez_Gene (NCBI)LRIT3  345193  leucine rich repeat, Ig-like and transmembrane domains 3
AliasesCSNB1F; FIGLER4
GeneCards (Weizmann)LRIT3
Ensembl hg19 (Hinxton)ENSG00000183423 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183423 [Gene_View]  chr4:109848184-109872315 [Contig_View]  LRIT3 [Vega]
ICGC DataPortalENSG00000183423
TCGA cBioPortalLRIT3
AceView (NCBI)LRIT3
Genatlas (Paris)LRIT3
WikiGenes345193
SOURCE (Princeton)LRIT3
Genetics Home Reference (NIH)LRIT3
Genomic and cartography
GoldenPath hg38 (UCSC)LRIT3  -     chr4:109848184-109872315 +  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRIT3  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblLRIT3 - 4q25 [CytoView hg19]  LRIT3 - 4q25 [CytoView hg38]
Mapping of homologs : NCBILRIT3 [Mapview hg19]  LRIT3 [Mapview hg38]
OMIM615004   615058   
Gene and transcription
Genbank (Entrez)AK126648 BC104037 BM665581 DN994055 DT932743
RefSeq transcript (Entrez)NM_198506
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRIT3
Cluster EST : UnigeneHs.308127 [ NCBI ]
CGAP (NCI)Hs.308127
Alternative Splicing GalleryENSG00000183423
Gene ExpressionLRIT3 [ NCBI-GEO ]   LRIT3 [ EBI - ARRAY_EXPRESS ]   LRIT3 [ SEEK ]   LRIT3 [ MEM ]
Gene Expression Viewer (FireBrowse)LRIT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)345193
GTEX Portal (Tissue expression)LRIT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SXY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SXY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SXY7
Splice isoforms : SwissVarQ3SXY7
PhosPhoSitePlusQ3SXY7
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)    LRR (PS51450)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRIT3
DMDM Disease mutations345193
Blocks (Seattle)LRIT3
SuperfamilyQ3SXY7
Human Protein AtlasENSG00000183423
Peptide AtlasQ3SXY7
HPRD13495
IPIIPI00394850   IPI00746317   
Protein Interaction databases
DIP (DOE-UCLA)Q3SXY7
IntAct (EBI)Q3SXY7
FunCoupENSG00000183423
BioGRIDLRIT3
STRING (EMBL)LRIT3
ZODIACLRIT3
Ontologies - Pathways
QuickGOQ3SXY7
Ontology : AmiGOendoplasmic reticulum membrane  visual perception  integral component of membrane  dendrite  regulation of fibroblast growth factor receptor signaling pathway  perikaryon  response to stimulus  
Ontology : EGO-EBIendoplasmic reticulum membrane  visual perception  integral component of membrane  dendrite  regulation of fibroblast growth factor receptor signaling pathway  perikaryon  response to stimulus  
NDEx NetworkLRIT3
Atlas of Cancer Signalling NetworkLRIT3
Wikipedia pathwaysLRIT3
Orthology - Evolution
OrthoDB345193
GeneTree (enSembl)ENSG00000183423
Phylogenetic Trees/Animal Genes : TreeFamLRIT3
HOVERGENQ3SXY7
HOGENOMQ3SXY7
Homologs : HomoloGeneLRIT3
Homology/Alignments : Family Browser (UCSC)LRIT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRIT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRIT3
dbVarLRIT3
ClinVarLRIT3
1000_GenomesLRIT3 
Exome Variant ServerLRIT3
ExAC (Exome Aggregation Consortium)LRIT3 (select the gene name)
Genetic variants : HAPMAP345193
Genomic Variants (DGV)LRIT3 [DGVbeta]
DECIPHERLRIT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRIT3 
Mutations
ICGC Data PortalLRIT3 
TCGA Data PortalLRIT3 
Broad Tumor PortalLRIT3
OASIS PortalLRIT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRIT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRIT3
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch LRIT3
DgiDB (Drug Gene Interaction Database)LRIT3
DoCM (Curated mutations)LRIT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRIT3 (select a term)
intoGenLRIT3
Cancer3DLRIT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615004    615058   
Orphanet923   
MedgenLRIT3
Genetic Testing Registry LRIT3
NextProtQ3SXY7 [Medical]
TSGene345193
GENETestsLRIT3
Target ValidationLRIT3
Huge Navigator LRIT3 [HugePedia]
snp3D : Map Gene to Disease345193
BioCentury BCIQLRIT3
ClinGenLRIT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD345193
Chemical/Pharm GKB GenePA162394355
Clinical trialLRIT3
Miscellaneous
canSAR (ICR)LRIT3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRIT3
EVEXLRIT3
GoPubMedLRIT3
iHOPLRIT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:24:44 CEST 2017

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