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LRP10 (LDL receptor related protein 10)

Identity

Alias_nameslow density lipoprotein receptor-related protein 10
Alias_symbol (synonym)DKFZP564C1940
MGC8675
LRP9
MST087
MSTP087
Other aliasLRP-10
HGNC (Hugo) LRP10
LocusID (NCBI) 26020
Atlas_Id 56379
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 22871717 and ends at 22881711 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LRP10 (14q11.2) / RAB13 (1q21.3)LRP10 (14q11.2) / REM2 (14q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRP10   14553
Cards
Entrez_Gene (NCBI)LRP10  26020  LDL receptor related protein 10
AliasesLRP-10; LRP9; MST087; MSTP087
GeneCards (Weizmann)LRP10
Ensembl hg19 (Hinxton)ENSG00000197324 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197324 [Gene_View]  chr14:22871717-22881711 [Contig_View]  LRP10 [Vega]
ICGC DataPortalENSG00000197324
TCGA cBioPortalLRP10
AceView (NCBI)LRP10
Genatlas (Paris)LRP10
WikiGenes26020
SOURCE (Princeton)LRP10
Genetics Home Reference (NIH)LRP10
Genomic and cartography
GoldenPath hg38 (UCSC)LRP10  -     chr14:22871717-22881711 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRP10  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblLRP10 - 14q11.2 [CytoView hg19]  LRP10 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBILRP10 [Mapview hg19]  LRP10 [Mapview hg38]
OMIM609921   
Gene and transcription
Genbank (Entrez)AF131760 AF172816 AF177336 AI692207 AK025898
RefSeq transcript (Entrez)NM_001329226 NM_014045
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRP10
Cluster EST : UnigeneHs.657588 [ NCBI ]
CGAP (NCI)Hs.657588
Alternative Splicing GalleryENSG00000197324
Gene ExpressionLRP10 [ NCBI-GEO ]   LRP10 [ EBI - ARRAY_EXPRESS ]   LRP10 [ SEEK ]   LRP10 [ MEM ]
Gene Expression Viewer (FireBrowse)LRP10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26020
GTEX Portal (Tissue expression)LRP10
Human Protein AtlasENSG00000197324-LRP10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4F1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4F1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4F1
Splice isoforms : SwissVarQ7Z4F1
PhosPhoSitePlusQ7Z4F1
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    LDLRA_1 (PS01209)    LDLRA_2 (PS50068)   
Domains : Interpro (EBI)CUB_dom    LDLR_class-A_CS    LDrepeatLR_classA_rpt   
Domain families : Pfam (Sanger)CUB (PF00431)    Ldl_recept_a (PF00057)   
Domain families : Pfam (NCBI)pfam00431    pfam00057   
Domain families : Smart (EMBL)CUB (SM00042)  LDLa (SM00192)  
Conserved Domain (NCBI)LRP10
DMDM Disease mutations26020
Blocks (Seattle)LRP10
SuperfamilyQ7Z4F1
Human Protein Atlas [tissue]ENSG00000197324-LRP10 [tissue]
Peptide AtlasQ7Z4F1
HPRD14311
IPIIPI00414231   IPI00472951   IPI01023068   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4F1
IntAct (EBI)Q7Z4F1
FunCoupENSG00000197324
BioGRIDLRP10
STRING (EMBL)LRP10
ZODIACLRP10
Ontologies - Pathways
QuickGOQ7Z4F1
Ontology : AmiGOlow-density lipoprotein receptor activity  clathrin-coated pit  lipid metabolic process  lipid transport  receptor-mediated endocytosis  membrane  integral component of membrane  inner ear development  
Ontology : EGO-EBIlow-density lipoprotein receptor activity  clathrin-coated pit  lipid metabolic process  lipid transport  receptor-mediated endocytosis  membrane  integral component of membrane  inner ear development  
NDEx NetworkLRP10
Atlas of Cancer Signalling NetworkLRP10
Wikipedia pathwaysLRP10
Orthology - Evolution
OrthoDB26020
GeneTree (enSembl)ENSG00000197324
Phylogenetic Trees/Animal Genes : TreeFamLRP10
HOVERGENQ7Z4F1
HOGENOMQ7Z4F1
Homologs : HomoloGeneLRP10
Homology/Alignments : Family Browser (UCSC)LRP10
Gene fusions - Rearrangements
Tumor Fusion PortalLRP10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRP10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRP10
dbVarLRP10
ClinVarLRP10
1000_GenomesLRP10 
Exome Variant ServerLRP10
ExAC (Exome Aggregation Consortium)ENSG00000197324
GNOMAD BrowserENSG00000197324
Genetic variants : HAPMAP26020
Genomic Variants (DGV)LRP10 [DGVbeta]
DECIPHERLRP10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRP10 
Mutations
ICGC Data PortalLRP10 
TCGA Data PortalLRP10 
Broad Tumor PortalLRP10
OASIS PortalLRP10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRP10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRP10
BioMutasearch LRP10
DgiDB (Drug Gene Interaction Database)LRP10
DoCM (Curated mutations)LRP10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRP10 (select a term)
intoGenLRP10
Cancer3DLRP10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609921   
Orphanet
DisGeNETLRP10
MedgenLRP10
Genetic Testing Registry LRP10
NextProtQ7Z4F1 [Medical]
TSGene26020
GENETestsLRP10
Target ValidationLRP10
Huge Navigator LRP10 [HugePedia]
snp3D : Map Gene to Disease26020
BioCentury BCIQLRP10
ClinGenLRP10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26020
Chemical/Pharm GKB GenePA38383
Clinical trialLRP10
Miscellaneous
canSAR (ICR)LRP10 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRP10
EVEXLRP10
GoPubMedLRP10
iHOPLRP10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:20:53 CET 2017

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