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LRP2BP (LRP2 binding protein)

Identity

Alias_symbol (synonym)DKFZp761O0113
Other alias-
HGNC (Hugo) LRP2BP
LocusID (NCBI) 55805
Atlas_Id 40325
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 185363878 and ends at 185378998 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRP2BP   25434
Cards
Entrez_Gene (NCBI)LRP2BP  55805  LRP2 binding protein
Aliases
GeneCards (Weizmann)LRP2BP
Ensembl hg19 (Hinxton)ENSG00000109771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109771 [Gene_View]  chr4:185363878-185378998 [Contig_View]  LRP2BP [Vega]
ICGC DataPortalENSG00000109771
TCGA cBioPortalLRP2BP
AceView (NCBI)LRP2BP
Genatlas (Paris)LRP2BP
WikiGenes55805
SOURCE (Princeton)LRP2BP
Genetics Home Reference (NIH)LRP2BP
Genomic and cartography
GoldenPath hg38 (UCSC)LRP2BP  -     chr4:185363878-185378998 -  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRP2BP  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblLRP2BP - 4q35.1 [CytoView hg19]  LRP2BP - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBILRP2BP [Mapview hg19]  LRP2BP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037746 AK126913 AL161975 BC150161 BC152444
RefSeq transcript (Entrez)NM_018409
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRP2BP
Cluster EST : UnigeneHs.558513 [ NCBI ]
CGAP (NCI)Hs.558513
Alternative Splicing GalleryENSG00000109771
Gene ExpressionLRP2BP [ NCBI-GEO ]   LRP2BP [ EBI - ARRAY_EXPRESS ]   LRP2BP [ SEEK ]   LRP2BP [ MEM ]
Gene Expression Viewer (FireBrowse)LRP2BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55805
GTEX Portal (Tissue expression)LRP2BP
Human Protein AtlasENSG00000109771-LRP2BP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2M1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2M1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2M1
Splice isoforms : SwissVarQ9P2M1
PhosPhoSitePlusQ9P2M1
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Sel1-like    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)Sel1 (PF08238)   
Domain families : Pfam (NCBI)pfam08238   
Domain families : Smart (EMBL)SEL1 (SM00671)  
Conserved Domain (NCBI)LRP2BP
DMDM Disease mutations55805
Blocks (Seattle)LRP2BP
SuperfamilyQ9P2M1
Human Protein Atlas [tissue]ENSG00000109771-LRP2BP [tissue]
Peptide AtlasQ9P2M1
HPRD10911
IPIIPI00744401   IPI00470656   IPI00964236   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2M1
IntAct (EBI)Q9P2M1
FunCoupENSG00000109771
BioGRIDLRP2BP
STRING (EMBL)LRP2BP
ZODIACLRP2BP
Ontologies - Pathways
QuickGOQ9P2M1
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkLRP2BP
Atlas of Cancer Signalling NetworkLRP2BP
Wikipedia pathwaysLRP2BP
Orthology - Evolution
OrthoDB55805
GeneTree (enSembl)ENSG00000109771
Phylogenetic Trees/Animal Genes : TreeFamLRP2BP
HOVERGENQ9P2M1
HOGENOMQ9P2M1
Homologs : HomoloGeneLRP2BP
Homology/Alignments : Family Browser (UCSC)LRP2BP
Gene fusions - Rearrangements
Tumor Fusion PortalLRP2BP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRP2BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRP2BP
dbVarLRP2BP
ClinVarLRP2BP
1000_GenomesLRP2BP 
Exome Variant ServerLRP2BP
ExAC (Exome Aggregation Consortium)ENSG00000109771
GNOMAD BrowserENSG00000109771
Genetic variants : HAPMAP55805
Genomic Variants (DGV)LRP2BP [DGVbeta]
DECIPHERLRP2BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRP2BP 
Mutations
ICGC Data PortalLRP2BP 
TCGA Data PortalLRP2BP 
Broad Tumor PortalLRP2BP
OASIS PortalLRP2BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRP2BP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRP2BP
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRP2BP
DgiDB (Drug Gene Interaction Database)LRP2BP
DoCM (Curated mutations)LRP2BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRP2BP (select a term)
intoGenLRP2BP
Cancer3DLRP2BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRP2BP
MedgenLRP2BP
Genetic Testing Registry LRP2BP
NextProtQ9P2M1 [Medical]
TSGene55805
GENETestsLRP2BP
Target ValidationLRP2BP
Huge Navigator LRP2BP [HugePedia]
snp3D : Map Gene to Disease55805
BioCentury BCIQLRP2BP
ClinGenLRP2BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55805
Chemical/Pharm GKB GenePA142671538
Clinical trialLRP2BP
Miscellaneous
canSAR (ICR)LRP2BP (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRP2BP
EVEXLRP2BP
GoPubMedLRP2BP
iHOPLRP2BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:20:54 CET 2017

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