Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LRP4-AS1 (LRP4 antisense RNA 1)

Identity

Alias_namesLRP4 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) LRP4-AS1
LocusID (NCBI) 100507401
Atlas_Id 68590
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46846411 and ends at 46874416 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LRP4-AS1   44128
Cards
Entrez_Gene (NCBI)LRP4-AS1  100507401  LRP4 antisense RNA 1
Aliases
GeneCards (Weizmann)LRP4-AS1
Ensembl hg19 (Hinxton)ENSG00000247675 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000247675 [Gene_View]  ENSG00000247675 [Sequence]  chr11:46846411-46874416 [Contig_View]  LRP4-AS1 [Vega]
ICGC DataPortalENSG00000247675
TCGA cBioPortalLRP4-AS1
AceView (NCBI)LRP4-AS1
Genatlas (Paris)LRP4-AS1
WikiGenes100507401
SOURCE (Princeton)LRP4-AS1
Genetics Home Reference (NIH)LRP4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)LRP4-AS1  -     chr11:46846411-46874416 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRP4-AS1  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblLRP4-AS1 - 11p11.2 [CytoView hg19]  LRP4-AS1 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBILRP4-AS1 [Mapview hg19]  LRP4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB443018 DB507953
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRP4-AS1
Cluster EST : UnigeneHs.675301 [ NCBI ]
CGAP (NCI)Hs.675301
Alternative Splicing GalleryENSG00000247675
Gene ExpressionLRP4-AS1 [ NCBI-GEO ]   LRP4-AS1 [ EBI - ARRAY_EXPRESS ]   LRP4-AS1 [ SEEK ]   LRP4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)LRP4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507401
GTEX Portal (Tissue expression)LRP4-AS1
Human Protein AtlasENSG00000247675-LRP4-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRP4-AS1
DMDM Disease mutations100507401
Blocks (Seattle)LRP4-AS1
Human Protein Atlas [tissue]ENSG00000247675-LRP4-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000247675
BioGRIDLRP4-AS1
STRING (EMBL)LRP4-AS1
ZODIACLRP4-AS1
Ontologies - Pathways
Huge Navigator LRP4-AS1 [HugePedia]
snp3D : Map Gene to Disease100507401
BioCentury BCIQLRP4-AS1
ClinGenLRP4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507401
Clinical trialLRP4-AS1
Miscellaneous
canSAR (ICR)LRP4-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRP4-AS1
EVEXLRP4-AS1
GoPubMedLRP4-AS1
iHOPLRP4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:11:37 CEST 2018
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