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LRP5L (LDL receptor related protein 5 like)

Identity

Alias_nameslow density lipoprotein receptor-related protein 5-like
Alias_symbol (synonym)DKFZp434O0213
Other alias-
HGNC (Hugo) LRP5L
LocusID (NCBI) 91355
Atlas_Id 68591
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 25351418 and ends at 25381577 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LRP5L (22q11.23) / LOC653501 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRP5L   25323
Cards
Entrez_Gene (NCBI)LRP5L  91355  LDL receptor related protein 5 like
Aliases
GeneCards (Weizmann)LRP5L
Ensembl hg19 (Hinxton)ENSG00000100068 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100068 [Gene_View]  chr22:25351418-25381577 [Contig_View]  LRP5L [Vega]
ICGC DataPortalENSG00000100068
TCGA cBioPortalLRP5L
AceView (NCBI)LRP5L
Genatlas (Paris)LRP5L
WikiGenes91355
SOURCE (Princeton)LRP5L
Genetics Home Reference (NIH)LRP5L
Genomic and cartography
GoldenPath hg38 (UCSC)LRP5L  -     chr22:25351418-25381577 -  22q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRP5L  -     22q11.23   [Description]    (hg19-Feb_2009)
EnsemblLRP5L - 22q11.23 [CytoView hg19]  LRP5L - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBILRP5L [Mapview hg19]  LRP5L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA307886 AK125903 AL137651 BC091519 BC137460
RefSeq transcript (Entrez)NM_001135772 NM_182492
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRP5L
Cluster EST : UnigeneHs.634058 [ NCBI ]
CGAP (NCI)Hs.634058
Alternative Splicing GalleryENSG00000100068
Gene ExpressionLRP5L [ NCBI-GEO ]   LRP5L [ EBI - ARRAY_EXPRESS ]   LRP5L [ SEEK ]   LRP5L [ MEM ]
Gene Expression Viewer (FireBrowse)LRP5L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91355
GTEX Portal (Tissue expression)LRP5L
Human Protein AtlasENSG00000100068-LRP5L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4QPB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4QPB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4QPB2
Splice isoforms : SwissVarA4QPB2
PhosPhoSitePlusA4QPB2
Domaine pattern : Prosite (Expaxy)LDLRB (PS51120)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    LDLR_classB_rpt   
Domain families : Pfam (Sanger)Ldl_recept_b (PF00058)   
Domain families : Pfam (NCBI)pfam00058   
Domain families : Smart (EMBL)LY (SM00135)  
Conserved Domain (NCBI)LRP5L
DMDM Disease mutations91355
Blocks (Seattle)LRP5L
SuperfamilyA4QPB2
Human Protein Atlas [tissue]ENSG00000100068-LRP5L [tissue]
Peptide AtlasA4QPB2
HPRD13200
IPIIPI00852688   IPI00018681   IPI01013685   IPI01014084   
Protein Interaction databases
DIP (DOE-UCLA)A4QPB2
IntAct (EBI)A4QPB2
FunCoupENSG00000100068
BioGRIDLRP5L
STRING (EMBL)LRP5L
ZODIACLRP5L
Ontologies - Pathways
QuickGOA4QPB2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRP5L
Atlas of Cancer Signalling NetworkLRP5L
Wikipedia pathwaysLRP5L
Orthology - Evolution
OrthoDB91355
GeneTree (enSembl)ENSG00000100068
Phylogenetic Trees/Animal Genes : TreeFamLRP5L
HOVERGENA4QPB2
HOGENOMA4QPB2
Homologs : HomoloGeneLRP5L
Homology/Alignments : Family Browser (UCSC)LRP5L
Gene fusions - Rearrangements
Tumor Fusion PortalLRP5L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRP5L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRP5L
dbVarLRP5L
ClinVarLRP5L
1000_GenomesLRP5L 
Exome Variant ServerLRP5L
ExAC (Exome Aggregation Consortium)ENSG00000100068
GNOMAD BrowserENSG00000100068
Genetic variants : HAPMAP91355
Genomic Variants (DGV)LRP5L [DGVbeta]
DECIPHERLRP5L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRP5L 
Mutations
ICGC Data PortalLRP5L 
TCGA Data PortalLRP5L 
Broad Tumor PortalLRP5L
OASIS PortalLRP5L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRP5L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRP5L
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRP5L
DgiDB (Drug Gene Interaction Database)LRP5L
DoCM (Curated mutations)LRP5L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRP5L (select a term)
intoGenLRP5L
Cancer3DLRP5L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRP5L
MedgenLRP5L
Genetic Testing Registry LRP5L
NextProtA4QPB2 [Medical]
TSGene91355
GENETestsLRP5L
Target ValidationLRP5L
Huge Navigator LRP5L [HugePedia]
snp3D : Map Gene to Disease91355
BioCentury BCIQLRP5L
ClinGenLRP5L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91355
Chemical/Pharm GKB GenePA142671533
Clinical trialLRP5L
Miscellaneous
canSAR (ICR)LRP5L (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRP5L
EVEXLRP5L
GoPubMedLRP5L
iHOPLRP5L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:43:54 CET 2017

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