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LRRC10 (leucine rich repeat containing 10)

Identity

Alias_symbol (synonym)HRLRRP
LRRC10A
Other alias
HGNC (Hugo) LRRC10
LocusID (NCBI) 376132
Atlas_Id 53795
Location 12q15  [Link to chromosome band 12q15]
Location_base_pair Starts at 69608565 and ends at 69611162 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC10   20264
Cards
Entrez_Gene (NCBI)LRRC10  376132  leucine rich repeat containing 10
AliasesHRLRRP; LRRC10A
GeneCards (Weizmann)LRRC10
Ensembl hg19 (Hinxton)ENSG00000198812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198812 [Gene_View]  chr12:69608565-69611162 [Contig_View]  LRRC10 [Vega]
ICGC DataPortalENSG00000198812
TCGA cBioPortalLRRC10
AceView (NCBI)LRRC10
Genatlas (Paris)LRRC10
WikiGenes376132
SOURCE (Princeton)LRRC10
Genetics Home Reference (NIH)LRRC10
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC10  -     chr12:69608565-69611162 -  12q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC10  -     12q15   [Description]    (hg19-Feb_2009)
EnsemblLRRC10 - 12q15 [CytoView hg19]  LRRC10 - 12q15 [CytoView hg38]
Mapping of homologs : NCBILRRC10 [Mapview hg19]  LRRC10 [Mapview hg38]
OMIM610846   
Gene and transcription
Genbank (Entrez)AK095935 AK123908 BC090881 BC106892 BC106893
RefSeq transcript (Entrez)NM_201550
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC10
Cluster EST : UnigeneHs.448708 [ NCBI ]
CGAP (NCI)Hs.448708
Alternative Splicing GalleryENSG00000198812
Gene ExpressionLRRC10 [ NCBI-GEO ]   LRRC10 [ EBI - ARRAY_EXPRESS ]   LRRC10 [ SEEK ]   LRRC10 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)376132
GTEX Portal (Tissue expression)LRRC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BKY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BKY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BKY1
Splice isoforms : SwissVarQ5BKY1
PhosPhoSitePlusQ5BKY1
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC10
DMDM Disease mutations376132
Blocks (Seattle)LRRC10
SuperfamilyQ5BKY1
Human Protein AtlasENSG00000198812
Peptide AtlasQ5BKY1
HPRD17449
IPIIPI00398429   
Protein Interaction databases
DIP (DOE-UCLA)Q5BKY1
IntAct (EBI)Q5BKY1
FunCoupENSG00000198812
BioGRIDLRRC10
STRING (EMBL)LRRC10
ZODIACLRRC10
Ontologies - Pathways
QuickGOQ5BKY1
Ontology : AmiGOactin binding  nucleus  mitochondrion  cytoskeleton  sarcomere  alpha-actinin binding  cardiac muscle cell development  
Ontology : EGO-EBIactin binding  nucleus  mitochondrion  cytoskeleton  sarcomere  alpha-actinin binding  cardiac muscle cell development  
NDEx NetworkLRRC10
Atlas of Cancer Signalling NetworkLRRC10
Wikipedia pathwaysLRRC10
Orthology - Evolution
OrthoDB376132
GeneTree (enSembl)ENSG00000198812
Phylogenetic Trees/Animal Genes : TreeFamLRRC10
HOVERGENQ5BKY1
HOGENOMQ5BKY1
Homologs : HomoloGeneLRRC10
Homology/Alignments : Family Browser (UCSC)LRRC10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC10
dbVarLRRC10
ClinVarLRRC10
1000_GenomesLRRC10 
Exome Variant ServerLRRC10
ExAC (Exome Aggregation Consortium)LRRC10 (select the gene name)
Genetic variants : HAPMAP376132
Genomic Variants (DGV)LRRC10 [DGVbeta]
DECIPHERLRRC10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC10 
Mutations
ICGC Data PortalLRRC10 
TCGA Data PortalLRRC10 
Broad Tumor PortalLRRC10
OASIS PortalLRRC10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC10
BioMutasearch LRRC10
DgiDB (Drug Gene Interaction Database)LRRC10
DoCM (Curated mutations)LRRC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC10 (select a term)
intoGenLRRC10
Cancer3DLRRC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610846   
Orphanet
MedgenLRRC10
Genetic Testing Registry LRRC10
NextProtQ5BKY1 [Medical]
TSGene376132
GENETestsLRRC10
Target ValidationLRRC10
Huge Navigator LRRC10 [HugePedia]
snp3D : Map Gene to Disease376132
BioCentury BCIQLRRC10
ClinGenLRRC10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD376132
Chemical/Pharm GKB GenePA134896853
Clinical trialLRRC10
Miscellaneous
canSAR (ICR)LRRC10 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC10
EVEXLRRC10
GoPubMedLRRC10
iHOPLRRC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:16:29 CEST 2017

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