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LRRC10B (leucine rich repeat containing 10B)

Identity

Alias (NCBI)-
HGNC (Hugo) LRRC10B
LocusID (NCBI) 390205
Atlas_Id 68593
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 61508800 and ends at 61511018 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LRRC10B   37215
Cards
Entrez_Gene (NCBI)LRRC10B    leucine rich repeat containing 10B
Aliases
GeneCards (Weizmann)LRRC10B
Ensembl hg19 (Hinxton)ENSG00000204950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204950 [Gene_View]  ENSG00000204950 [Sequence]  chr11:61508800-61511018 [Contig_View]  LRRC10B [Vega]
ICGC DataPortalENSG00000204950
TCGA cBioPortalLRRC10B
AceView (NCBI)LRRC10B
Genatlas (Paris)LRRC10B
SOURCE (Princeton)LRRC10B
Genetics Home Reference (NIH)LRRC10B
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC10B  -     chr11:61508800-61511018 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC10B  -     11q12.2   [Description]    (hg19-Feb_2009)
GoldenPathLRRC10B - 11q12.2 [CytoView hg19]  LRRC10B - 11q12.2 [CytoView hg38]
ImmunoBaseENSG00000204950
genome Data Viewer NCBILRRC10B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AW137416
RefSeq transcript (Entrez)NM_001145077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC10B
Alternative Splicing GalleryENSG00000204950
Gene ExpressionLRRC10B [ NCBI-GEO ]   LRRC10B [ EBI - ARRAY_EXPRESS ]   LRRC10B [ SEEK ]   LRRC10B [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC10B [ Firebrowse - Broad ]
GenevisibleExpression of LRRC10B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390205
GTEX Portal (Tissue expression)LRRC10B
Human Protein AtlasENSG00000204950-LRRC10B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIK2
Splice isoforms : SwissVarA6NIK2
PhosPhoSitePlusA6NIK2
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR_dom_sf   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC10B
Blocks (Seattle)LRRC10B
SuperfamilyA6NIK2
Human Protein Atlas [tissue]ENSG00000204950-LRRC10B [tissue]
Peptide AtlasA6NIK2
IPIIPI00375742   
Protein Interaction databases
DIP (DOE-UCLA)A6NIK2
IntAct (EBI)A6NIK2
BioGRIDLRRC10B
STRING (EMBL)LRRC10B
ZODIACLRRC10B
Ontologies - Pathways
QuickGOA6NIK2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC10B
Atlas of Cancer Signalling NetworkLRRC10B
Wikipedia pathwaysLRRC10B
Orthology - Evolution
OrthoDB390205
GeneTree (enSembl)ENSG00000204950
Phylogenetic Trees/Animal Genes : TreeFamLRRC10B
HOGENOMA6NIK2
Homologs : HomoloGeneLRRC10B
Homology/Alignments : Family Browser (UCSC)LRRC10B
Gene fusions - Rearrangements
Fusion : QuiverLRRC10B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC10B [hg38]
dbVarLRRC10B
ClinVarLRRC10B
MonarchLRRC10B
1000_GenomesLRRC10B 
Exome Variant ServerLRRC10B
GNOMAD BrowserENSG00000204950
Varsome BrowserLRRC10B
Genomic Variants (DGV)LRRC10B [DGVbeta]
DECIPHERLRRC10B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC10B 
Mutations
ICGC Data PortalLRRC10B 
TCGA Data PortalLRRC10B 
Broad Tumor PortalLRRC10B
OASIS PortalLRRC10B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC10B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLRRC10B
Mutations and Diseases : HGMDLRRC10B
BioMutasearch LRRC10B
DgiDB (Drug Gene Interaction Database)LRRC10B
DoCM (Curated mutations)LRRC10B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC10B (select a term)
intoGenLRRC10B
Cancer3DLRRC10B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRRC10B
MedgenLRRC10B
Genetic Testing Registry LRRC10B
NextProtA6NIK2 [Medical]
GENETestsLRRC10B
Target ValidationLRRC10B
Huge Navigator LRRC10B [HugePedia]
ClinGenLRRC10B
Clinical trials, drugs, therapy
MyCancerGenomeLRRC10B
Protein Interactions : CTD
Pharm GKB GenePA165543456
Clinical trialLRRC10B
Miscellaneous
canSAR (ICR)LRRC10B (select the gene name)
HarmonizomeLRRC10B
DataMed IndexLRRC10B
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC10B
EVEXLRRC10B
GoPubMedLRRC10B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:12:04 CET 2020

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