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LRRC10B (leucine rich repeat containing 10B)

Identity

Other alias-
HGNC (Hugo) LRRC10B
LocusID (NCBI) 390205
Atlas_Id 68593
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 61508800 and ends at 61511018 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC10B   37215
Cards
Entrez_Gene (NCBI)LRRC10B  390205  leucine rich repeat containing 10B
Aliases
GeneCards (Weizmann)LRRC10B
Ensembl hg19 (Hinxton)ENSG00000204950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204950 [Gene_View]  chr11:61508800-61511018 [Contig_View]  LRRC10B [Vega]
ICGC DataPortalENSG00000204950
TCGA cBioPortalLRRC10B
AceView (NCBI)LRRC10B
Genatlas (Paris)LRRC10B
WikiGenes390205
SOURCE (Princeton)LRRC10B
Genetics Home Reference (NIH)LRRC10B
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC10B  -     chr11:61508800-61511018 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC10B  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblLRRC10B - 11q12.2 [CytoView hg19]  LRRC10B - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBILRRC10B [Mapview hg19]  LRRC10B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW137416
RefSeq transcript (Entrez)NM_001145077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC10B
Cluster EST : UnigeneHs.441122 [ NCBI ]
CGAP (NCI)Hs.441122
Alternative Splicing GalleryENSG00000204950
Gene ExpressionLRRC10B [ NCBI-GEO ]   LRRC10B [ EBI - ARRAY_EXPRESS ]   LRRC10B [ SEEK ]   LRRC10B [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC10B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390205
GTEX Portal (Tissue expression)LRRC10B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIK2
Splice isoforms : SwissVarA6NIK2
PhosPhoSitePlusA6NIK2
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC10B
DMDM Disease mutations390205
Blocks (Seattle)LRRC10B
SuperfamilyA6NIK2
Human Protein AtlasENSG00000204950
Peptide AtlasA6NIK2
IPIIPI00375742   
Protein Interaction databases
DIP (DOE-UCLA)A6NIK2
IntAct (EBI)A6NIK2
FunCoupENSG00000204950
BioGRIDLRRC10B
STRING (EMBL)LRRC10B
ZODIACLRRC10B
Ontologies - Pathways
QuickGOA6NIK2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC10B
Atlas of Cancer Signalling NetworkLRRC10B
Wikipedia pathwaysLRRC10B
Orthology - Evolution
OrthoDB390205
GeneTree (enSembl)ENSG00000204950
Phylogenetic Trees/Animal Genes : TreeFamLRRC10B
HOVERGENA6NIK2
HOGENOMA6NIK2
Homologs : HomoloGeneLRRC10B
Homology/Alignments : Family Browser (UCSC)LRRC10B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC10B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC10B
dbVarLRRC10B
ClinVarLRRC10B
1000_GenomesLRRC10B 
Exome Variant ServerLRRC10B
ExAC (Exome Aggregation Consortium)LRRC10B (select the gene name)
Genetic variants : HAPMAP390205
Genomic Variants (DGV)LRRC10B [DGVbeta]
DECIPHERLRRC10B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC10B 
Mutations
ICGC Data PortalLRRC10B 
TCGA Data PortalLRRC10B 
Broad Tumor PortalLRRC10B
OASIS PortalLRRC10B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC10B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC10B
BioMutasearch LRRC10B
DgiDB (Drug Gene Interaction Database)LRRC10B
DoCM (Curated mutations)LRRC10B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC10B (select a term)
intoGenLRRC10B
Cancer3DLRRC10B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC10B
Genetic Testing Registry LRRC10B
NextProtA6NIK2 [Medical]
TSGene390205
GENETestsLRRC10B
Target ValidationLRRC10B
Huge Navigator LRRC10B [HugePedia]
snp3D : Map Gene to Disease390205
BioCentury BCIQLRRC10B
ClinGenLRRC10B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390205
Chemical/Pharm GKB GenePA165543456
Clinical trialLRRC10B
Miscellaneous
canSAR (ICR)LRRC10B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC10B
EVEXLRRC10B
GoPubMedLRRC10B
iHOPLRRC10B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:46 CEST 2017

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