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LRRC14 (leucine rich repeat containing 14)

Identity

Alias_symbol (synonym)KIAA0014
LRRC14A
Other alias
HGNC (Hugo) LRRC14
LocusID (NCBI) 9684
Atlas_Id 41201
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 145743349 and ends at 145750559 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LRRC14 (8q24.3) / LRRC14 (8q24.3)MFSD3 (8q24.3) / LRRC14 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC14   20419
Cards
Entrez_Gene (NCBI)LRRC14  9684  leucine rich repeat containing 14
AliasesLRRC14A
GeneCards (Weizmann)LRRC14
Ensembl hg19 (Hinxton)ENSG00000160959 [Gene_View]  chr8:145743349-145750559 [Contig_View]  LRRC14 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160959 [Gene_View]  chr8:145743349-145750559 [Contig_View]  LRRC14 [Vega]
ICGC DataPortalENSG00000160959
TCGA cBioPortalLRRC14
AceView (NCBI)LRRC14
Genatlas (Paris)LRRC14
WikiGenes9684
SOURCE (Princeton)LRRC14
Genetics Home Reference (NIH)LRRC14
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC14  -     chr8:145743349-145750559 +  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC14  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblLRRC14 - 8q24.3 [CytoView hg19]  LRRC14 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBILRRC14 [Mapview hg19]  LRRC14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK289473 BC011377 BU634522 D25216 GQ129434
RefSeq transcript (Entrez)NM_001272036 NM_014665
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_033083 NT_008046 NW_004929341
Consensus coding sequences : CCDS (NCBI)LRRC14
Cluster EST : UnigeneHs.459391 [ NCBI ]
CGAP (NCI)Hs.459391
Alternative Splicing GalleryENSG00000160959
Gene ExpressionLRRC14 [ NCBI-GEO ]   LRRC14 [ EBI - ARRAY_EXPRESS ]   LRRC14 [ SEEK ]   LRRC14 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9684
GTEX Portal (Tissue expression)LRRC14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15048   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15048  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15048
Splice isoforms : SwissVarQ15048
PhosPhoSitePlusQ15048
Domains : Interpro (EBI)L_dom-like    LRRC14   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC14
DMDM Disease mutations9684
Blocks (Seattle)LRRC14
SuperfamilyQ15048
Human Protein AtlasENSG00000160959
Peptide AtlasQ15048
HPRD14312
IPIIPI00014239   IPI00978984   IPI00978618   IPI00982266   
Protein Interaction databases
DIP (DOE-UCLA)Q15048
IntAct (EBI)Q15048
FunCoupENSG00000160959
BioGRIDLRRC14
STRING (EMBL)LRRC14
ZODIACLRRC14
Ontologies - Pathways
QuickGOQ15048
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC14
Atlas of Cancer Signalling NetworkLRRC14
Wikipedia pathwaysLRRC14
Orthology - Evolution
OrthoDB9684
GeneTree (enSembl)ENSG00000160959
Phylogenetic Trees/Animal Genes : TreeFamLRRC14
HOVERGENQ15048
HOGENOMQ15048
Homologs : HomoloGeneLRRC14
Homology/Alignments : Family Browser (UCSC)LRRC14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC14
dbVarLRRC14
ClinVarLRRC14
1000_GenomesLRRC14 
Exome Variant ServerLRRC14
ExAC (Exome Aggregation Consortium)LRRC14 (select the gene name)
Genetic variants : HAPMAP9684
Genomic Variants (DGV)LRRC14 [DGVbeta]
DECIPHER (Syndromes)8:145743349-145750559  ENSG00000160959
CONAN: Copy Number AnalysisLRRC14 
Mutations
ICGC Data PortalLRRC14 
TCGA Data PortalLRRC14 
Broad Tumor PortalLRRC14
OASIS PortalLRRC14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC14
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC14
DgiDB (Drug Gene Interaction Database)LRRC14
DoCM (Curated mutations)LRRC14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC14 (select a term)
intoGenLRRC14
Cancer3DLRRC14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC14
Genetic Testing Registry LRRC14
NextProtQ15048 [Medical]
TSGene9684
GENETestsLRRC14
Huge Navigator LRRC14 [HugePedia]
snp3D : Map Gene to Disease9684
BioCentury BCIQLRRC14
ClinGenLRRC14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9684
Chemical/Pharm GKB GenePA134914089
Clinical trialLRRC14
Miscellaneous
canSAR (ICR)LRRC14 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC14
EVEXLRRC14
GoPubMedLRRC14
iHOPLRRC14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:13:47 CET 2017

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