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LRRC14B (leucine rich repeat containing 14B)

Identity

Other alias-
HGNC (Hugo) LRRC14B
LocusID (NCBI) 389257
Atlas_Id 68594
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 191626 and ends at 195468 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC14B   37268
Cards
Entrez_Gene (NCBI)LRRC14B  389257  leucine rich repeat containing 14B
Aliases
GeneCards (Weizmann)LRRC14B
Ensembl hg19 (Hinxton)ENSG00000185028 [Gene_View]  chr5:191626-195468 [Contig_View]  LRRC14B [Vega]
Ensembl hg38 (Hinxton)ENSG00000185028 [Gene_View]  chr5:191626-195468 [Contig_View]  LRRC14B [Vega]
ICGC DataPortalENSG00000185028
TCGA cBioPortalLRRC14B
AceView (NCBI)LRRC14B
Genatlas (Paris)LRRC14B
WikiGenes389257
SOURCE (Princeton)LRRC14B
Genetics Home Reference (NIH)LRRC14B
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC14B  -     chr5:191626-195468 +  5p15.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC14B  -     5p15.33   [Description]    (hg38-Dec_2013)
EnsemblLRRC14B - 5p15.33 [CytoView hg19]  LRRC14B - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBILRRC14B [Mapview hg19]  LRRC14B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156515 BC172511
RefSeq transcript (Entrez)NM_001080478
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)LRRC14B
Cluster EST : UnigeneHs.683662 [ NCBI ]
CGAP (NCI)Hs.683662
Alternative Splicing GalleryENSG00000185028
Gene ExpressionLRRC14B [ NCBI-GEO ]   LRRC14B [ EBI - ARRAY_EXPRESS ]   LRRC14B [ SEEK ]   LRRC14B [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC14B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389257
GTEX Portal (Tissue expression)LRRC14B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHZ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHZ5
Splice isoforms : SwissVarA6NHZ5
PhosPhoSitePlusA6NHZ5
Domains : Interpro (EBI)PRAME/Leu_rich_rep-con_p14   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC14B
DMDM Disease mutations389257
Blocks (Seattle)LRRC14B
SuperfamilyA6NHZ5
Human Protein AtlasENSG00000185028
Peptide AtlasA6NHZ5
IPIIPI00398024   
Protein Interaction databases
DIP (DOE-UCLA)A6NHZ5
IntAct (EBI)A6NHZ5
FunCoupENSG00000185028
BioGRIDLRRC14B
STRING (EMBL)LRRC14B
ZODIACLRRC14B
Ontologies - Pathways
QuickGOA6NHZ5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC14B
Atlas of Cancer Signalling NetworkLRRC14B
Wikipedia pathwaysLRRC14B
Orthology - Evolution
OrthoDB389257
GeneTree (enSembl)ENSG00000185028
Phylogenetic Trees/Animal Genes : TreeFamLRRC14B
HOVERGENA6NHZ5
HOGENOMA6NHZ5
Homologs : HomoloGeneLRRC14B
Homology/Alignments : Family Browser (UCSC)LRRC14B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC14B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC14B
dbVarLRRC14B
ClinVarLRRC14B
1000_GenomesLRRC14B 
Exome Variant ServerLRRC14B
ExAC (Exome Aggregation Consortium)LRRC14B (select the gene name)
Genetic variants : HAPMAP389257
Genomic Variants (DGV)LRRC14B [DGVbeta]
DECIPHER (Syndromes)5:191626-195468  ENSG00000185028
CONAN: Copy Number AnalysisLRRC14B 
Mutations
ICGC Data PortalLRRC14B 
TCGA Data PortalLRRC14B 
Broad Tumor PortalLRRC14B
OASIS PortalLRRC14B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC14B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC14B
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC14B
DgiDB (Drug Gene Interaction Database)LRRC14B
DoCM (Curated mutations)LRRC14B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC14B (select a term)
intoGenLRRC14B
Cancer3DLRRC14B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC14B
Genetic Testing Registry LRRC14B
NextProtA6NHZ5 [Medical]
TSGene389257
GENETestsLRRC14B
Huge Navigator LRRC14B [HugePedia]
snp3D : Map Gene to Disease389257
BioCentury BCIQLRRC14B
ClinGenLRRC14B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389257
Chemical/Pharm GKB GenePA165660376
Clinical trialLRRC14B
Miscellaneous
canSAR (ICR)LRRC14B (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC14B
EVEXLRRC14B
GoPubMedLRRC14B
iHOPLRRC14B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:00 CET 2017

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