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LRRC16B (leucine rich repeat containing 16B)

Identity

Other aliasC14orf121
CARMIL3
crml-1
HGNC (Hugo) LRRC16B
LocusID (NCBI) 90668
Atlas_Id 68596
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 24521206 and ends at 24538937 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC16B   20272
Cards
Entrez_Gene (NCBI)LRRC16B  90668  leucine rich repeat containing 16B
AliasesC14orf121; CARMIL3; crml-1
GeneCards (Weizmann)LRRC16B
Ensembl hg19 (Hinxton)ENSG00000186648 [Gene_View]  chr14:24521206-24538937 [Contig_View]  LRRC16B [Vega]
Ensembl hg38 (Hinxton)ENSG00000186648 [Gene_View]  chr14:24521206-24538937 [Contig_View]  LRRC16B [Vega]
ICGC DataPortalENSG00000186648
TCGA cBioPortalLRRC16B
AceView (NCBI)LRRC16B
Genatlas (Paris)LRRC16B
WikiGenes90668
SOURCE (Princeton)LRRC16B
Genetics Home Reference (NIH)LRRC16B
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC16B  -     chr14:24521206-24538937 +  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC16B  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblLRRC16B - 14q11.2 [CytoView hg19]  LRRC16B - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBILRRC16B [Mapview hg19]  LRRC16B [Mapview hg38]
OMIM614716   
Gene and transcription
Genbank (Entrez)AI017934 AI631690 AK074167 AL834197 BC008134
RefSeq transcript (Entrez)NM_138360
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)LRRC16B
Cluster EST : UnigeneHs.26135 [ NCBI ]
CGAP (NCI)Hs.26135
Alternative Splicing GalleryENSG00000186648
Gene ExpressionLRRC16B [ NCBI-GEO ]   LRRC16B [ EBI - ARRAY_EXPRESS ]   LRRC16B [ SEEK ]   LRRC16B [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC16B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90668
GTEX Portal (Tissue expression)LRRC16B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8ND23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND23
Splice isoforms : SwissVarQ8ND23
PhosPhoSitePlusQ8ND23
Domains : Interpro (EBI)LRRC16B   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC16B
DMDM Disease mutations90668
Blocks (Seattle)LRRC16B
SuperfamilyQ8ND23
Human Protein AtlasENSG00000186648
Peptide AtlasQ8ND23
HPRD11278
IPIIPI00301676   IPI00749462   IPI00886998   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND23
IntAct (EBI)Q8ND23
FunCoupENSG00000186648
BioGRIDLRRC16B
STRING (EMBL)LRRC16B
ZODIACLRRC16B
Ontologies - Pathways
QuickGOQ8ND23
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkLRRC16B
Atlas of Cancer Signalling NetworkLRRC16B
Wikipedia pathwaysLRRC16B
Orthology - Evolution
OrthoDB90668
GeneTree (enSembl)ENSG00000186648
Phylogenetic Trees/Animal Genes : TreeFamLRRC16B
HOVERGENQ8ND23
HOGENOMQ8ND23
Homologs : HomoloGeneLRRC16B
Homology/Alignments : Family Browser (UCSC)LRRC16B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC16B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC16B
dbVarLRRC16B
ClinVarLRRC16B
1000_GenomesLRRC16B 
Exome Variant ServerLRRC16B
ExAC (Exome Aggregation Consortium)LRRC16B (select the gene name)
Genetic variants : HAPMAP90668
Genomic Variants (DGV)LRRC16B [DGVbeta]
DECIPHER (Syndromes)14:24521206-24538937  ENSG00000186648
CONAN: Copy Number AnalysisLRRC16B 
Mutations
ICGC Data PortalLRRC16B 
TCGA Data PortalLRRC16B 
Broad Tumor PortalLRRC16B
OASIS PortalLRRC16B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC16B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC16B
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC16B
DgiDB (Drug Gene Interaction Database)LRRC16B
DoCM (Curated mutations)LRRC16B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC16B (select a term)
intoGenLRRC16B
Cancer3DLRRC16B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614716   
Orphanet
MedgenLRRC16B
Genetic Testing Registry LRRC16B
NextProtQ8ND23 [Medical]
TSGene90668
GENETestsLRRC16B
Huge Navigator LRRC16B [HugePedia]
snp3D : Map Gene to Disease90668
BioCentury BCIQLRRC16B
ClinGenLRRC16B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90668
Chemical/Pharm GKB GenePA162394445
Clinical trialLRRC16B
Miscellaneous
canSAR (ICR)LRRC16B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC16B
EVEXLRRC16B
GoPubMedLRRC16B
iHOPLRRC16B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:00 CET 2017

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