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LRRC17 (leucine rich repeat containing 17)

Identity

Alias_symbol (synonym)P37NB
H_RG318M05.3
Other alias
HGNC (Hugo) LRRC17
LocusID (NCBI) 10234
Atlas_Id 41202
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 102912897 and ends at 102945109 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC17   16895
Cards
Entrez_Gene (NCBI)LRRC17  10234  leucine rich repeat containing 17
AliasesP37NB
GeneCards (Weizmann)LRRC17
Ensembl hg19 (Hinxton)ENSG00000128606 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128606 [Gene_View]  chr7:102912897-102945109 [Contig_View]  LRRC17 [Vega]
ICGC DataPortalENSG00000128606
TCGA cBioPortalLRRC17
AceView (NCBI)LRRC17
Genatlas (Paris)LRRC17
WikiGenes10234
SOURCE (Princeton)LRRC17
Genetics Home Reference (NIH)LRRC17
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC17  -     chr7:102912897-102945109 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC17  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC17 - 7q22.1 [CytoView hg19]  LRRC17 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBILRRC17 [Mapview hg19]  LRRC17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI961444 AK225701 AK226021 AK290305 AY358889
RefSeq transcript (Entrez)NM_001031692 NM_005824
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC17
Cluster EST : UnigeneHs.567412 [ NCBI ]
CGAP (NCI)Hs.567412
Alternative Splicing GalleryENSG00000128606
Gene ExpressionLRRC17 [ NCBI-GEO ]   LRRC17 [ EBI - ARRAY_EXPRESS ]   LRRC17 [ SEEK ]   LRRC17 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10234
GTEX Portal (Tissue expression)LRRC17
Human Protein AtlasENSG00000128606-LRRC17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6Y2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6Y2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6Y2
Splice isoforms : SwissVarQ8N6Y2
PhosPhoSitePlusQ8N6Y2
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)LRRC17
DMDM Disease mutations10234
Blocks (Seattle)LRRC17
SuperfamilyQ8N6Y2
Human Protein Atlas [tissue]ENSG00000128606-LRRC17 [tissue]
Peptide AtlasQ8N6Y2
HPRD10059
IPIIPI00171160   IPI00418181   IPI00927038   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6Y2
IntAct (EBI)Q8N6Y2
FunCoupENSG00000128606
BioGRIDLRRC17
STRING (EMBL)LRRC17
ZODIACLRRC17
Ontologies - Pathways
QuickGOQ8N6Y2
Ontology : AmiGOosteoblast differentiation  extracellular space  osteoblast proliferation  negative regulation of osteoclast differentiation  bone marrow development  
Ontology : EGO-EBIosteoblast differentiation  extracellular space  osteoblast proliferation  negative regulation of osteoclast differentiation  bone marrow development  
NDEx NetworkLRRC17
Atlas of Cancer Signalling NetworkLRRC17
Wikipedia pathwaysLRRC17
Orthology - Evolution
OrthoDB10234
GeneTree (enSembl)ENSG00000128606
Phylogenetic Trees/Animal Genes : TreeFamLRRC17
HOVERGENQ8N6Y2
HOGENOMQ8N6Y2
Homologs : HomoloGeneLRRC17
Homology/Alignments : Family Browser (UCSC)LRRC17
Gene fusions - Rearrangements
Fusion: Tumor Portal LRRC17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC17
dbVarLRRC17
ClinVarLRRC17
1000_GenomesLRRC17 
Exome Variant ServerLRRC17
ExAC (Exome Aggregation Consortium)ENSG00000128606
GNOMAD BrowserENSG00000128606
Genetic variants : HAPMAP10234
Genomic Variants (DGV)LRRC17 [DGVbeta]
DECIPHERLRRC17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC17 
Mutations
ICGC Data PortalLRRC17 
TCGA Data PortalLRRC17 
Broad Tumor PortalLRRC17
OASIS PortalLRRC17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC17
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC17
DgiDB (Drug Gene Interaction Database)LRRC17
DoCM (Curated mutations)LRRC17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC17 (select a term)
intoGenLRRC17
Cancer3DLRRC17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC17
Genetic Testing Registry LRRC17
NextProtQ8N6Y2 [Medical]
TSGene10234
GENETestsLRRC17
Target ValidationLRRC17
Huge Navigator LRRC17 [HugePedia]
snp3D : Map Gene to Disease10234
BioCentury BCIQLRRC17
ClinGenLRRC17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10234
Chemical/Pharm GKB GenePA134866295
Clinical trialLRRC17
Miscellaneous
canSAR (ICR)LRRC17 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC17
EVEXLRRC17
GoPubMedLRRC17
iHOPLRRC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:57:23 CET 2017

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