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LRRC17 (leucine rich repeat containing 17)

Identity

Other namesP37NB
HGNC (Hugo) LRRC17
LocusID (NCBI) 10234
Location 7q22.1
Location_base_pair Starts at 102553344 and ends at 102585556 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LRRC17   16895
Entrez_Gene (NCBI)LRRC17  10234  leucine rich repeat containing 17
Cards
GeneCards (Weizmann)LRRC17
Ensembl (Hinxton)ENSG00000128606 [Gene_View]  chr7:102553344-102585556 [Contig_View]  LRRC17 [Vega]
AceView (NCBI)LRRC17
Genatlas (Paris)LRRC17
SOURCE (Stanford)NM_001031692 NM_005824
Genomic and cartography
GoldenPath (UCSC)LRRC17  -  7q22.1   chr7:102553344-102585556 +  7q22.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC17 - 7q22.1 [CytoView]
Mapping of homologs : NCBILRRC17 [Mapview]
Gene and transcription
Genbank (Entrez)AI961444 AK225701 AK226021 AK290305 AY358889
RefSeq transcript (SRS)NM_001031692 NM_005824
RefSeq transcript (Entrez)NM_001031692 NM_005824
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079596 NW_001839071 NW_004078032
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079596 NW_001839071 NW_004078032
Consensus coding sequences : CCDS (NCBI)LRRC17
Cluster EST : UnigeneHs.567412 [ SRS ] Hs.567412 [ NCBI ]
CGAP (NCI)Hs.567412
Alternative Splicing : Fast-db (Paris)GSHG0027618
Alternative Splicing GalleryENSG00000128606
Gene ExpressionLRRC17 [ NCBI-GEO ]   LRRC17 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6Y2 (SRS) Q8N6Y2 (Uniprot)
NextProtQ8N6Y2
With graphics : InterProQ8N6Y2
Splice isoforms : SwissVarQ8N6Y2(Swissvar)
Domaine pattern : Prosite (SRS)LRR (PS51450)   
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (SRS)Cys-rich_flank_reg_C    Leu-rich_rpt   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Leu-rich_rpt   
Related proteins : CluSTrQ8N6Y2
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LRRCT (SM00082)  
DMDM10234
Blocks (Seattle)Q8N6Y2
Human Protein AtlasENSG00000128606
HPRD10059
IPIIPI00171160   IPI00418181   IPI00927038   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6Y2
IntAct (EBI)Q8N6Y2
FunCoupENSG00000128606
REACTOMELRRC17
Protein Interaction Database10234
BioGRIDLRRC17
InParanoidQ8N6Y2
Interologous Interaction database Q8N6Y2
IntegromeDBLRRC17
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LRRC17
SNP (GeneSNP Utah)LRRC17
SNP : HGBaseLRRC17
Genetic variants : HAPMAPLRRC17
Somatic Mutations in Cancer : COSMICLRRC17 
CONAN: Copy Number AnalysisLRRC17 
Mutations and Diseases : HGMDLRRC17
OMIM
GENETests
Disease Genetic AssociationLRRC17
Huge Navigator LRRC17 [HugePedia]  LRRC17 [HugeCancerGEM]
Genomic VariantsLRRC17  LRRC17 [DGVbeta]
snp3D : Map Gene to Disease10234
General knowledge
Homologs : HomoloGeneLRRC17
Homology/Alignments : Family Browser (UCSC)LRRC17
Phylogenetic Trees/Animal Genes : TreeFamLRRC17
Chemical/Protein Interactions : CTD10234
Chemical/Pharm GKB GenePA134866295
Clinical trialLRRC17
Cancer Resource (Charite)ENSG00000128606
Ontology : AmiGOosteoblast differentiation  extracellular space  osteoblast proliferation  negative regulation of osteoclast differentiation  bone marrow development  
Ontology : EGO-EBIosteoblast differentiation  extracellular space  osteoblast proliferation  negative regulation of osteoclast differentiation  bone marrow development  
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
PubGeneLRRC17
iHOPLRRC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:27:17 CEST 2013
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