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LRRC18 (leucine rich repeat containing 18)

Identity

Alias_symbol (synonym)UNQ933
MGC34773
UNQ9338
VKGE9338
Other alias
HGNC (Hugo) LRRC18
LocusID (NCBI) 474354
Atlas_Id 68597
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 48909484 and ends at 48914235 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC18   23199
Cards
Entrez_Gene (NCBI)LRRC18  474354  leucine rich repeat containing 18
AliasesUNQ933; UNQ9338; VKGE9338
GeneCards (Weizmann)LRRC18
Ensembl hg19 (Hinxton)ENSG00000165383 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165383 [Gene_View]  chr10:48909484-48914235 [Contig_View]  LRRC18 [Vega]
ICGC DataPortalENSG00000165383
TCGA cBioPortalLRRC18
AceView (NCBI)LRRC18
Genatlas (Paris)LRRC18
WikiGenes474354
SOURCE (Princeton)LRRC18
Genetics Home Reference (NIH)LRRC18
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC18  -     chr10:48909484-48914235 -  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC18  -     10q11.23   [Description]    (hg19-Feb_2009)
EnsemblLRRC18 - 10q11.23 [CytoView hg19]  LRRC18 - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBILRRC18 [Mapview hg19]  LRRC18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358137 BC036722 HQ447995
RefSeq transcript (Entrez)NM_001006939
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC18
Cluster EST : UnigeneHs.202438 [ NCBI ]
CGAP (NCI)Hs.202438
Alternative Splicing GalleryENSG00000165383
Gene ExpressionLRRC18 [ NCBI-GEO ]   LRRC18 [ EBI - ARRAY_EXPRESS ]   LRRC18 [ SEEK ]   LRRC18 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)474354
GTEX Portal (Tissue expression)LRRC18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N456   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N456  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N456
Splice isoforms : SwissVarQ8N456
PhosPhoSitePlusQ8N456
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC18
DMDM Disease mutations474354
Blocks (Seattle)LRRC18
SuperfamilyQ8N456
Human Protein AtlasENSG00000165383
Peptide AtlasQ8N456
HPRD17450
IPIIPI00419754   IPI00651706   
Protein Interaction databases
DIP (DOE-UCLA)Q8N456
IntAct (EBI)Q8N456
FunCoupENSG00000165383
BioGRIDLRRC18
STRING (EMBL)LRRC18
ZODIACLRRC18
Ontologies - Pathways
QuickGOQ8N456
Ontology : AmiGOcytoplasm  plasma membrane  signal transduction  
Ontology : EGO-EBIcytoplasm  plasma membrane  signal transduction  
NDEx NetworkLRRC18
Atlas of Cancer Signalling NetworkLRRC18
Wikipedia pathwaysLRRC18
Orthology - Evolution
OrthoDB474354
GeneTree (enSembl)ENSG00000165383
Phylogenetic Trees/Animal Genes : TreeFamLRRC18
HOVERGENQ8N456
HOGENOMQ8N456
Homologs : HomoloGeneLRRC18
Homology/Alignments : Family Browser (UCSC)LRRC18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC18
dbVarLRRC18
ClinVarLRRC18
1000_GenomesLRRC18 
Exome Variant ServerLRRC18
ExAC (Exome Aggregation Consortium)LRRC18 (select the gene name)
Genetic variants : HAPMAP474354
Genomic Variants (DGV)LRRC18 [DGVbeta]
DECIPHERLRRC18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC18 
Mutations
ICGC Data PortalLRRC18 
TCGA Data PortalLRRC18 
Broad Tumor PortalLRRC18
OASIS PortalLRRC18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC18
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC18
DgiDB (Drug Gene Interaction Database)LRRC18
DoCM (Curated mutations)LRRC18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC18 (select a term)
intoGenLRRC18
Cancer3DLRRC18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC18
Genetic Testing Registry LRRC18
NextProtQ8N456 [Medical]
TSGene474354
GENETestsLRRC18
Target ValidationLRRC18
Huge Navigator LRRC18 [HugePedia]
snp3D : Map Gene to Disease474354
BioCentury BCIQLRRC18
ClinGenLRRC18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD474354
Chemical/Pharm GKB GenePA134898691
Clinical trialLRRC18
Miscellaneous
canSAR (ICR)LRRC18 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC18
EVEXLRRC18
GoPubMedLRRC18
iHOPLRRC18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:27 CEST 2017

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