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LRRC19 (leucine rich repeat containing 19)

Identity

Alias_symbol (synonym)FLJ21302
Other alias-
HGNC (Hugo) LRRC19
LocusID (NCBI) 64922
Atlas_Id 68598
Location 9p21.2  [Link to chromosome band 9p21]
Location_base_pair Starts at 26993137 and ends at 27005693 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZCCHC7 (9p13.2) / LRRC19 (9p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC19   23379
Cards
Entrez_Gene (NCBI)LRRC19  64922  leucine rich repeat containing 19
Aliases
GeneCards (Weizmann)LRRC19
Ensembl hg19 (Hinxton)ENSG00000184434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184434 [Gene_View]  chr9:26993137-27005693 [Contig_View]  LRRC19 [Vega]
ICGC DataPortalENSG00000184434
TCGA cBioPortalLRRC19
AceView (NCBI)LRRC19
Genatlas (Paris)LRRC19
WikiGenes64922
SOURCE (Princeton)LRRC19
Genetics Home Reference (NIH)LRRC19
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC19  -     chr9:26993137-27005693 -  9p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC19  -     9p21.2   [Description]    (hg19-Feb_2009)
EnsemblLRRC19 - 9p21.2 [CytoView hg19]  LRRC19 - 9p21.2 [CytoView hg38]
Mapping of homologs : NCBILRRC19 [Mapview hg19]  LRRC19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024955 AK025070 AK222987 BC056252 BC126156
RefSeq transcript (Entrez)NM_022901
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC19
Cluster EST : UnigeneHs.128071 [ NCBI ]
CGAP (NCI)Hs.128071
Alternative Splicing GalleryENSG00000184434
Gene ExpressionLRRC19 [ NCBI-GEO ]   LRRC19 [ EBI - ARRAY_EXPRESS ]   LRRC19 [ SEEK ]   LRRC19 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64922
GTEX Portal (Tissue expression)LRRC19
Human Protein AtlasENSG00000184434-LRRC19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H756   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H756  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H756
Splice isoforms : SwissVarQ9H756
PhosPhoSitePlusQ9H756
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)LRRC19
DMDM Disease mutations64922
Blocks (Seattle)LRRC19
SuperfamilyQ9H756
Human Protein Atlas [tissue]ENSG00000184434-LRRC19 [tissue]
Peptide AtlasQ9H756
HPRD14313
IPIIPI00009653   
Protein Interaction databases
DIP (DOE-UCLA)Q9H756
IntAct (EBI)Q9H756
FunCoupENSG00000184434
BioGRIDLRRC19
STRING (EMBL)LRRC19
ZODIACLRRC19
Ontologies - Pathways
QuickGOQ9H756
Ontology : AmiGOprotein kinase inhibitor activity  cytoplasm  negative regulation of protein kinase activity  integral component of membrane  cytokine-mediated signaling pathway  negative regulation of JAK-STAT cascade  
Ontology : EGO-EBIprotein kinase inhibitor activity  cytoplasm  negative regulation of protein kinase activity  integral component of membrane  cytokine-mediated signaling pathway  negative regulation of JAK-STAT cascade  
NDEx NetworkLRRC19
Atlas of Cancer Signalling NetworkLRRC19
Wikipedia pathwaysLRRC19
Orthology - Evolution
OrthoDB64922
GeneTree (enSembl)ENSG00000184434
Phylogenetic Trees/Animal Genes : TreeFamLRRC19
HOVERGENQ9H756
HOGENOMQ9H756
Homologs : HomoloGeneLRRC19
Homology/Alignments : Family Browser (UCSC)LRRC19
Gene fusions - Rearrangements
Fusion: Tumor Portal LRRC19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC19
dbVarLRRC19
ClinVarLRRC19
1000_GenomesLRRC19 
Exome Variant ServerLRRC19
ExAC (Exome Aggregation Consortium)ENSG00000184434
GNOMAD BrowserENSG00000184434
Genetic variants : HAPMAP64922
Genomic Variants (DGV)LRRC19 [DGVbeta]
DECIPHERLRRC19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC19 
Mutations
ICGC Data PortalLRRC19 
TCGA Data PortalLRRC19 
Broad Tumor PortalLRRC19
OASIS PortalLRRC19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC19
BioMutasearch LRRC19
DgiDB (Drug Gene Interaction Database)LRRC19
DoCM (Curated mutations)LRRC19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC19 (select a term)
intoGenLRRC19
Cancer3DLRRC19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC19
Genetic Testing Registry LRRC19
NextProtQ9H756 [Medical]
TSGene64922
GENETestsLRRC19
Target ValidationLRRC19
Huge Navigator LRRC19 [HugePedia]
snp3D : Map Gene to Disease64922
BioCentury BCIQLRRC19
ClinGenLRRC19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64922
Chemical/Pharm GKB GenePA134892454
Clinical trialLRRC19
Miscellaneous
canSAR (ICR)LRRC19 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC19
EVEXLRRC19
GoPubMedLRRC19
iHOPLRRC19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:11:34 CET 2017

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