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LRRC2 (leucine rich repeat containing 2)

Identity

Alias_namesleucine-rich repeat-containing 2
Other alias-
HGNC (Hugo) LRRC2
LocusID (NCBI) 79442
Atlas_Id 68599
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 46515388 and ends at 46566550 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HBB (11p15.4) / LRRC2 (3p21.31)HPRT1 (Xq26.2) / LRRC2 (3p21.31)LRRC2 (3p21.31) / LRRC2 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC2   14676
Cards
Entrez_Gene (NCBI)LRRC2  79442  leucine rich repeat containing 2
Aliases
GeneCards (Weizmann)LRRC2
Ensembl hg19 (Hinxton)ENSG00000163827 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163827 [Gene_View]  chr3:46515388-46566550 [Contig_View]  LRRC2 [Vega]
ICGC DataPortalENSG00000163827
TCGA cBioPortalLRRC2
AceView (NCBI)LRRC2
Genatlas (Paris)LRRC2
WikiGenes79442
SOURCE (Princeton)LRRC2
Genetics Home Reference (NIH)LRRC2
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC2  -     chr3:46515388-46566550 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC2  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblLRRC2 - 3p21.31 [CytoView hg19]  LRRC2 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBILRRC2 [Mapview hg19]  LRRC2 [Mapview hg38]
OMIM607180   
Gene and transcription
Genbank (Entrez)AJ308569 AK057808 AK223440 AK314658 AK315636
RefSeq transcript (Entrez)NM_024512 NM_024750
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC2
Cluster EST : UnigeneHs.657345 [ NCBI ]
CGAP (NCI)Hs.657345
Alternative Splicing GalleryENSG00000163827
Gene ExpressionLRRC2 [ NCBI-GEO ]   LRRC2 [ EBI - ARRAY_EXPRESS ]   LRRC2 [ SEEK ]   LRRC2 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79442
GTEX Portal (Tissue expression)LRRC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYS8
Splice isoforms : SwissVarQ9BYS8
PhosPhoSitePlusQ9BYS8
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC2
DMDM Disease mutations79442
Blocks (Seattle)LRRC2
SuperfamilyQ9BYS8
Human Protein AtlasENSG00000163827
Peptide AtlasQ9BYS8
HPRD06213
IPIIPI00065256   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYS8
IntAct (EBI)Q9BYS8
FunCoupENSG00000163827
BioGRIDLRRC2
STRING (EMBL)LRRC2
ZODIACLRRC2
Ontologies - Pathways
QuickGOQ9BYS8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC2
Atlas of Cancer Signalling NetworkLRRC2
Wikipedia pathwaysLRRC2
Orthology - Evolution
OrthoDB79442
GeneTree (enSembl)ENSG00000163827
Phylogenetic Trees/Animal Genes : TreeFamLRRC2
HOVERGENQ9BYS8
HOGENOMQ9BYS8
Homologs : HomoloGeneLRRC2
Homology/Alignments : Family Browser (UCSC)LRRC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC2
dbVarLRRC2
ClinVarLRRC2
1000_GenomesLRRC2 
Exome Variant ServerLRRC2
ExAC (Exome Aggregation Consortium)LRRC2 (select the gene name)
Genetic variants : HAPMAP79442
Genomic Variants (DGV)LRRC2 [DGVbeta]
DECIPHERLRRC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC2 
Mutations
ICGC Data PortalLRRC2 
TCGA Data PortalLRRC2 
Broad Tumor PortalLRRC2
OASIS PortalLRRC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC2
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC2
DgiDB (Drug Gene Interaction Database)LRRC2
DoCM (Curated mutations)LRRC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC2 (select a term)
intoGenLRRC2
Cancer3DLRRC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607180   
Orphanet
MedgenLRRC2
Genetic Testing Registry LRRC2
NextProtQ9BYS8 [Medical]
TSGene79442
GENETestsLRRC2
Target ValidationLRRC2
Huge Navigator LRRC2 [HugePedia]
snp3D : Map Gene to Disease79442
BioCentury BCIQLRRC2
ClinGenLRRC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79442
Chemical/Pharm GKB GenePA30461
Clinical trialLRRC2
Miscellaneous
canSAR (ICR)LRRC2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC2
EVEXLRRC2
GoPubMedLRRC2
iHOPLRRC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:27 CEST 2017

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