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LRRC20 (leucine rich repeat containing 20)

Identity

Alias_symbol (synonym)FLJ10751
FLJ10844
Other alias-
HGNC (Hugo) LRRC20
LocusID (NCBI) 55222
Atlas_Id 68600
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 70298970 and ends at 70382650 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LRRC20 (10q22.1) / NODAL (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC20   23421
Cards
Entrez_Gene (NCBI)LRRC20  55222  leucine rich repeat containing 20
Aliases
GeneCards (Weizmann)LRRC20
Ensembl hg19 (Hinxton)ENSG00000172731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172731 [Gene_View]  chr10:70298970-70382650 [Contig_View]  LRRC20 [Vega]
ICGC DataPortalENSG00000172731
TCGA cBioPortalLRRC20
AceView (NCBI)LRRC20
Genatlas (Paris)LRRC20
WikiGenes55222
SOURCE (Princeton)LRRC20
Genetics Home Reference (NIH)LRRC20
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC20  -     chr10:70298970-70382650 -  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC20  -     10q22.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC20 - 10q22.1 [CytoView hg19]  LRRC20 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBILRRC20 [Mapview hg19]  LRRC20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI703022 AK001613 AK001706 AK094734 AL122117
RefSeq transcript (Entrez)NM_001278211 NM_001278212 NM_001278213 NM_001278214 NM_018205 NM_018239 NM_207119
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC20
Cluster EST : UnigeneHs.7778 [ NCBI ]
CGAP (NCI)Hs.7778
Alternative Splicing GalleryENSG00000172731
Gene ExpressionLRRC20 [ NCBI-GEO ]   LRRC20 [ EBI - ARRAY_EXPRESS ]   LRRC20 [ SEEK ]   LRRC20 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55222
GTEX Portal (Tissue expression)LRRC20
Human Protein AtlasENSG00000172731-LRRC20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCA0
Splice isoforms : SwissVarQ8TCA0
PhosPhoSitePlusQ8TCA0
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00560    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC20
DMDM Disease mutations55222
Blocks (Seattle)LRRC20
SuperfamilyQ8TCA0
Human Protein Atlas [tissue]ENSG00000172731-LRRC20 [tissue]
Peptide AtlasQ8TCA0
HPRD14314
IPIIPI00152330   IPI00410486   IPI00018929   IPI00647802   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCA0
IntAct (EBI)Q8TCA0
FunCoupENSG00000172731
BioGRIDLRRC20
STRING (EMBL)LRRC20
ZODIACLRRC20
Ontologies - Pathways
QuickGOQ8TCA0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLRRC20
Atlas of Cancer Signalling NetworkLRRC20
Wikipedia pathwaysLRRC20
Orthology - Evolution
OrthoDB55222
GeneTree (enSembl)ENSG00000172731
Phylogenetic Trees/Animal Genes : TreeFamLRRC20
HOVERGENQ8TCA0
HOGENOMQ8TCA0
Homologs : HomoloGeneLRRC20
Homology/Alignments : Family Browser (UCSC)LRRC20
Gene fusions - Rearrangements
Tumor Fusion PortalLRRC20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC20
dbVarLRRC20
ClinVarLRRC20
1000_GenomesLRRC20 
Exome Variant ServerLRRC20
ExAC (Exome Aggregation Consortium)ENSG00000172731
GNOMAD BrowserENSG00000172731
Genetic variants : HAPMAP55222
Genomic Variants (DGV)LRRC20 [DGVbeta]
DECIPHERLRRC20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC20 
Mutations
ICGC Data PortalLRRC20 
TCGA Data PortalLRRC20 
Broad Tumor PortalLRRC20
OASIS PortalLRRC20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC20
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRC20
DgiDB (Drug Gene Interaction Database)LRRC20
DoCM (Curated mutations)LRRC20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC20 (select a term)
intoGenLRRC20
Cancer3DLRRC20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRRC20
MedgenLRRC20
Genetic Testing Registry LRRC20
NextProtQ8TCA0 [Medical]
TSGene55222
GENETestsLRRC20
Target ValidationLRRC20
Huge Navigator LRRC20 [HugePedia]
snp3D : Map Gene to Disease55222
BioCentury BCIQLRRC20
ClinGenLRRC20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55222
Chemical/Pharm GKB GenePA134935389
Clinical trialLRRC20
Miscellaneous
canSAR (ICR)LRRC20 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC20
EVEXLRRC20
GoPubMedLRRC20
iHOPLRRC20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:22:00 CET 2017

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