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LRRC20 (leucine rich repeat containing 20)

Identity

Alias (NCBI)-
HGNC (Hugo) LRRC20
HGNC Alias symbFLJ10751
FLJ10844
LocusID (NCBI) 55222
Atlas_Id 68600
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 70298975 and ends at 70381566 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LRRC20 (10q22.1) / NODAL (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LRRC20   23421
Cards
Entrez_Gene (NCBI)LRRC20    leucine rich repeat containing 20
Aliases
GeneCards (Weizmann)LRRC20
Ensembl hg19 (Hinxton)ENSG00000172731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172731 [Gene_View]  ENSG00000172731 [Sequence]  chr10:70298975-70381566 [Contig_View]  LRRC20 [Vega]
ICGC DataPortalENSG00000172731
TCGA cBioPortalLRRC20
AceView (NCBI)LRRC20
Genatlas (Paris)LRRC20
SOURCE (Princeton)LRRC20
Genetics Home Reference (NIH)LRRC20
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC20  -     chr10:70298975-70381566 -  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC20  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathLRRC20 - 10q22.1 [CytoView hg19]  LRRC20 - 10q22.1 [CytoView hg38]
ImmunoBaseENSG00000172731
Genome Data Viewer NCBILRRC20 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI703022 AK001613 AK001706 AK094734 AL122117
RefSeq transcript (Entrez)NM_001278211 NM_001278212 NM_001278213 NM_001278214 NM_018205 NM_018239 NM_207119
Consensus coding sequences : CCDS (NCBI)LRRC20
Gene ExpressionLRRC20 [ NCBI-GEO ]   LRRC20 [ EBI - ARRAY_EXPRESS ]   LRRC20 [ SEEK ]   LRRC20 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC20 [ Firebrowse - Broad ]
GenevisibleExpression of LRRC20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55222
GTEX Portal (Tissue expression)LRRC20
Human Protein AtlasENSG00000172731-LRRC20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCA0
PhosPhoSitePlusQ8TCA0
Domains : Interpro (EBI)Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR_dom_sf    LRRC20   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00560    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC20
SuperfamilyQ8TCA0
AlphaFold pdb e-kbQ8TCA0   
Human Protein Atlas [tissue]ENSG00000172731-LRRC20 [tissue]
HPRD14314
Protein Interaction databases
DIP (DOE-UCLA)Q8TCA0
IntAct (EBI)Q8TCA0
BioGRIDLRRC20
STRING (EMBL)LRRC20
ZODIACLRRC20
Ontologies - Pathways
QuickGOQ8TCA0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLRRC20
Atlas of Cancer Signalling NetworkLRRC20
Wikipedia pathwaysLRRC20
Orthology - Evolution
OrthoDB55222
GeneTree (enSembl)ENSG00000172731
Phylogenetic Trees/Animal Genes : TreeFamLRRC20
Homologs : HomoloGeneLRRC20
Homology/Alignments : Family Browser (UCSC)LRRC20
Gene fusions - Rearrangements
Fusion : QuiverLRRC20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC20
dbVarLRRC20
ClinVarLRRC20
MonarchLRRC20
1000_GenomesLRRC20 
Exome Variant ServerLRRC20
GNOMAD BrowserENSG00000172731
Varsome BrowserLRRC20
ACMGLRRC20 variants
VarityQ8TCA0
Genomic Variants (DGV)LRRC20 [DGVbeta]
DECIPHERLRRC20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC20 
Mutations
ICGC Data PortalLRRC20 
TCGA Data PortalLRRC20 
Broad Tumor PortalLRRC20
OASIS PortalLRRC20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLRRC20
Mutations and Diseases : HGMDLRRC20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLRRC20
DgiDB (Drug Gene Interaction Database)LRRC20
DoCM (Curated mutations)LRRC20
CIViC (Clinical Interpretations of Variants in Cancer)LRRC20
Cancer3DLRRC20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRRC20
MedgenLRRC20
Genetic Testing Registry LRRC20
NextProtQ8TCA0 [Medical]
GENETestsLRRC20
Target ValidationLRRC20
Huge Navigator LRRC20 [HugePedia]
ClinGenLRRC20
Clinical trials, drugs, therapy
MyCancerGenomeLRRC20
Protein Interactions : CTDLRRC20
Pharm GKB GenePA134935389
PharosQ8TCA0
Clinical trialLRRC20
Miscellaneous
canSAR (ICR)LRRC20
HarmonizomeLRRC20
DataMed IndexLRRC20
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLRRC20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:06:13 CEST 2021

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