Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LRRC23 (leucine rich repeat containing 23)

Identity

Alias_symbol (synonym)B7
LRPB7
Other alias
HGNC (Hugo) LRRC23
LocusID (NCBI) 10233
Atlas_Id 68601
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6904733 and ends at 6914242 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AC093799.1 () / LRRC23 (12p13.31)LPCAT3 (12p13.31) / LRRC23 (12p13.31)LRRC23 (12p13.31) / CAMKK2 (12q24.31)
LRRC23 (12p13.31) / LSM10 (1p34.3)AC093799.1 LRRC23LPCAT3 LRRC23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC23   19138
Cards
Entrez_Gene (NCBI)LRRC23  10233  leucine rich repeat containing 23
AliasesLRPB7
GeneCards (Weizmann)LRRC23
Ensembl hg19 (Hinxton)ENSG00000010626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010626 [Gene_View]  chr12:6904733-6914242 [Contig_View]  LRRC23 [Vega]
ICGC DataPortalENSG00000010626
TCGA cBioPortalLRRC23
AceView (NCBI)LRRC23
Genatlas (Paris)LRRC23
WikiGenes10233
SOURCE (Princeton)LRRC23
Genetics Home Reference (NIH)LRRC23
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC23  -     chr12:6904733-6914242 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC23  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblLRRC23 - 12p13.31 [CytoView hg19]  LRRC23 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBILRRC23 [Mapview hg19]  LRRC23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI524335 AK223535 AK292291 AK292367 AY834277
RefSeq transcript (Entrez)NM_001135217 NM_006992 NM_201650
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC23
Cluster EST : UnigeneHs.661103 [ NCBI ]
CGAP (NCI)Hs.661103
Alternative Splicing GalleryENSG00000010626
Gene ExpressionLRRC23 [ NCBI-GEO ]   LRRC23 [ EBI - ARRAY_EXPRESS ]   LRRC23 [ SEEK ]   LRRC23 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10233
GTEX Portal (Tissue expression)LRRC23
Human Protein AtlasENSG00000010626-LRRC23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53EV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53EV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53EV4
Splice isoforms : SwissVarQ53EV4
PhosPhoSitePlusQ53EV4
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam13516   
Conserved Domain (NCBI)LRRC23
DMDM Disease mutations10233
Blocks (Seattle)LRRC23
SuperfamilyQ53EV4
Human Protein Atlas [tissue]ENSG00000010626-LRRC23 [tissue]
Peptide AtlasQ53EV4
HPRD09818
IPIIPI00297362   IPI00295165   IPI00927019   IPI00925985   IPI00925854   IPI00925631   IPI00925343   
Protein Interaction databases
DIP (DOE-UCLA)Q53EV4
IntAct (EBI)Q53EV4
FunCoupENSG00000010626
BioGRIDLRRC23
STRING (EMBL)LRRC23
ZODIACLRRC23
Ontologies - Pathways
QuickGOQ53EV4
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkLRRC23
Atlas of Cancer Signalling NetworkLRRC23
Wikipedia pathwaysLRRC23
Orthology - Evolution
OrthoDB10233
GeneTree (enSembl)ENSG00000010626
Phylogenetic Trees/Animal Genes : TreeFamLRRC23
HOVERGENQ53EV4
HOGENOMQ53EV4
Homologs : HomoloGeneLRRC23
Homology/Alignments : Family Browser (UCSC)LRRC23
Gene fusions - Rearrangements
Fusion: TCGA_MDACCAC093799.1 LRRC23
Fusion: TCGA_MDACCLPCAT3 LRRC23
Tumor Fusion PortalLRRC23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC23
dbVarLRRC23
ClinVarLRRC23
1000_GenomesLRRC23 
Exome Variant ServerLRRC23
ExAC (Exome Aggregation Consortium)ENSG00000010626
GNOMAD BrowserENSG00000010626
Genetic variants : HAPMAP10233
Genomic Variants (DGV)LRRC23 [DGVbeta]
DECIPHERLRRC23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC23 
Mutations
ICGC Data PortalLRRC23 
TCGA Data PortalLRRC23 
Broad Tumor PortalLRRC23
OASIS PortalLRRC23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC23
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC23
DgiDB (Drug Gene Interaction Database)LRRC23
DoCM (Curated mutations)LRRC23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC23 (select a term)
intoGenLRRC23
Cancer3DLRRC23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRRC23
MedgenLRRC23
Genetic Testing Registry LRRC23
NextProtQ53EV4 [Medical]
TSGene10233
GENETestsLRRC23
Target ValidationLRRC23
Huge Navigator LRRC23 [HugePedia]
snp3D : Map Gene to Disease10233
BioCentury BCIQLRRC23
ClinGenLRRC23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10233
Chemical/Pharm GKB GenePA143485529
Clinical trialLRRC23
Miscellaneous
canSAR (ICR)LRRC23 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC23
EVEXLRRC23
GoPubMedLRRC23
iHOPLRRC23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:44 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.