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LRRC24 (leucine rich repeat containing 24)

Identity

Alias_symbol (synonym)LRRC14OS
Other alias
HGNC (Hugo) LRRC24
LocusID (NCBI) 441381
Atlas_Id 68602
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144522377 and ends at 144527032 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RLIM (Xq13.2) / LRRC24 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC24   28947
Cards
Entrez_Gene (NCBI)LRRC24  441381  leucine rich repeat containing 24
AliasesLRRC14OS
GeneCards (Weizmann)LRRC24
Ensembl hg19 (Hinxton)ENSG00000254402 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254402 [Gene_View]  chr8:144522377-144527032 [Contig_View]  LRRC24 [Vega]
ICGC DataPortalENSG00000254402
TCGA cBioPortalLRRC24
AceView (NCBI)LRRC24
Genatlas (Paris)LRRC24
WikiGenes441381
SOURCE (Princeton)LRRC24
Genetics Home Reference (NIH)LRRC24
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC24  -     chr8:144522377-144527032 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC24  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblLRRC24 - 8q24.3 [CytoView hg19]  LRRC24 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBILRRC24 [Mapview hg19]  LRRC24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB178281 BC111067 BQ185133
RefSeq transcript (Entrez)NM_001024678
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC24
Cluster EST : UnigeneHs.740859 [ NCBI ]
CGAP (NCI)Hs.740859
Alternative Splicing GalleryENSG00000254402
Gene ExpressionLRRC24 [ NCBI-GEO ]   LRRC24 [ EBI - ARRAY_EXPRESS ]   LRRC24 [ SEEK ]   LRRC24 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441381
GTEX Portal (Tissue expression)LRRC24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ50LG9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ50LG9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ50LG9
Splice isoforms : SwissVarQ50LG9
PhosPhoSitePlusQ50LG9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)LRRC24
DMDM Disease mutations441381
Blocks (Seattle)LRRC24
SuperfamilyQ50LG9
Human Protein AtlasENSG00000254402
Peptide AtlasQ50LG9
HPRD18651
IPIIPI00455850   IPI00984328   
Protein Interaction databases
DIP (DOE-UCLA)Q50LG9
IntAct (EBI)Q50LG9
FunCoupENSG00000254402
BioGRIDLRRC24
STRING (EMBL)LRRC24
ZODIACLRRC24
Ontologies - Pathways
QuickGOQ50LG9
Ontology : AmiGOintegral component of membrane  positive regulation of synapse assembly  
Ontology : EGO-EBIintegral component of membrane  positive regulation of synapse assembly  
NDEx NetworkLRRC24
Atlas of Cancer Signalling NetworkLRRC24
Wikipedia pathwaysLRRC24
Orthology - Evolution
OrthoDB441381
GeneTree (enSembl)ENSG00000254402
Phylogenetic Trees/Animal Genes : TreeFamLRRC24
HOVERGENQ50LG9
HOGENOMQ50LG9
Homologs : HomoloGeneLRRC24
Homology/Alignments : Family Browser (UCSC)LRRC24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC24
dbVarLRRC24
ClinVarLRRC24
1000_GenomesLRRC24 
Exome Variant ServerLRRC24
ExAC (Exome Aggregation Consortium)LRRC24 (select the gene name)
Genetic variants : HAPMAP441381
Genomic Variants (DGV)LRRC24 [DGVbeta]
DECIPHERLRRC24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC24 
Mutations
ICGC Data PortalLRRC24 
TCGA Data PortalLRRC24 
Broad Tumor PortalLRRC24
OASIS PortalLRRC24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC24
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC24
DgiDB (Drug Gene Interaction Database)LRRC24
DoCM (Curated mutations)LRRC24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC24 (select a term)
intoGenLRRC24
Cancer3DLRRC24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC24
Genetic Testing Registry LRRC24
NextProtQ50LG9 [Medical]
TSGene441381
GENETestsLRRC24
Target ValidationLRRC24
Huge Navigator LRRC24 [HugePedia]
snp3D : Map Gene to Disease441381
BioCentury BCIQLRRC24
ClinGenLRRC24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441381
Chemical/Pharm GKB GenePA142671520
Clinical trialLRRC24
Miscellaneous
canSAR (ICR)LRRC24 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC24
EVEXLRRC24
GoPubMedLRRC24
iHOPLRRC24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:28 CEST 2017

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