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LRRC25 (leucine rich repeat containing 25)

Identity

Alias_symbol (synonym)MAPA
FLJ38116
Other alias
HGNC (Hugo) LRRC25
LocusID (NCBI) 126364
Atlas_Id 68603
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18391144 and ends at 18397605 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRRC25 (19p13.11) / ITGAX (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC25   29806
Cards
Entrez_Gene (NCBI)LRRC25  126364  leucine rich repeat containing 25
AliasesMAPA
GeneCards (Weizmann)LRRC25
Ensembl hg19 (Hinxton)ENSG00000175489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175489 [Gene_View]  chr19:18391144-18397605 [Contig_View]  LRRC25 [Vega]
ICGC DataPortalENSG00000175489
TCGA cBioPortalLRRC25
AceView (NCBI)LRRC25
Genatlas (Paris)LRRC25
WikiGenes126364
SOURCE (Princeton)LRRC25
Genetics Home Reference (NIH)LRRC25
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC25  -     chr19:18391144-18397605 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC25  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblLRRC25 - 19p13.11 [CytoView hg19]  LRRC25 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBILRRC25 [Mapview hg19]  LRRC25 [Mapview hg38]
OMIM607518   
Gene and transcription
Genbank (Entrez)AJ422148 AK095435 AY358151 BC025744 BC033825
RefSeq transcript (Entrez)NM_145256
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC25
Cluster EST : UnigeneHs.332156 [ NCBI ]
CGAP (NCI)Hs.332156
Alternative Splicing GalleryENSG00000175489
Gene ExpressionLRRC25 [ NCBI-GEO ]   LRRC25 [ EBI - ARRAY_EXPRESS ]   LRRC25 [ SEEK ]   LRRC25 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126364
GTEX Portal (Tissue expression)LRRC25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N386   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N386  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N386
Splice isoforms : SwissVarQ8N386
PhosPhoSitePlusQ8N386
Domains : Interpro (EBI)L_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC25
DMDM Disease mutations126364
Blocks (Seattle)LRRC25
SuperfamilyQ8N386
Human Protein AtlasENSG00000175489
Peptide AtlasQ8N386
HPRD09597
IPIIPI00296351   IPI00152029   
Protein Interaction databases
DIP (DOE-UCLA)Q8N386
IntAct (EBI)Q8N386
FunCoupENSG00000175489
BioGRIDLRRC25
STRING (EMBL)LRRC25
ZODIACLRRC25
Ontologies - Pathways
QuickGOQ8N386
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkLRRC25
Atlas of Cancer Signalling NetworkLRRC25
Wikipedia pathwaysLRRC25
Orthology - Evolution
OrthoDB126364
GeneTree (enSembl)ENSG00000175489
Phylogenetic Trees/Animal Genes : TreeFamLRRC25
HOVERGENQ8N386
HOGENOMQ8N386
Homologs : HomoloGeneLRRC25
Homology/Alignments : Family Browser (UCSC)LRRC25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC25
dbVarLRRC25
ClinVarLRRC25
1000_GenomesLRRC25 
Exome Variant ServerLRRC25
ExAC (Exome Aggregation Consortium)LRRC25 (select the gene name)
Genetic variants : HAPMAP126364
Genomic Variants (DGV)LRRC25 [DGVbeta]
DECIPHERLRRC25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC25 
Mutations
ICGC Data PortalLRRC25 
TCGA Data PortalLRRC25 
Broad Tumor PortalLRRC25
OASIS PortalLRRC25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC25
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC25
DgiDB (Drug Gene Interaction Database)LRRC25
DoCM (Curated mutations)LRRC25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC25 (select a term)
intoGenLRRC25
Cancer3DLRRC25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607518   
Orphanet
MedgenLRRC25
Genetic Testing Registry LRRC25
NextProtQ8N386 [Medical]
TSGene126364
GENETestsLRRC25
Target ValidationLRRC25
Huge Navigator LRRC25 [HugePedia]
snp3D : Map Gene to Disease126364
BioCentury BCIQLRRC25
ClinGenLRRC25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126364
Chemical/Pharm GKB GenePA134957834
Clinical trialLRRC25
Miscellaneous
canSAR (ICR)LRRC25 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC25
EVEXLRRC25
GoPubMedLRRC25
iHOPLRRC25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:48 CEST 2017

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