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LRRC26 (leucine rich repeat containing 26)

Identity

Alias_symbol (synonym)bA350O14.10
OTTHUMG00000020980
Other aliasCAPC
HGNC (Hugo) LRRC26
LocusID (NCBI) 389816
Atlas_Id 50874
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137168759 and ends at 137170039 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NDE1 (16p13.11) / LRRC26 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC26   31409
Cards
Entrez_Gene (NCBI)LRRC26  389816  leucine rich repeat containing 26
AliasesCAPC; bA350O14.10
GeneCards (Weizmann)LRRC26
Ensembl hg19 (Hinxton)ENSG00000184709 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184709 [Gene_View]  chr9:137168759-137170039 [Contig_View]  LRRC26 [Vega]
ICGC DataPortalENSG00000184709
TCGA cBioPortalLRRC26
AceView (NCBI)LRRC26
Genatlas (Paris)LRRC26
WikiGenes389816
SOURCE (Princeton)LRRC26
Genetics Home Reference (NIH)LRRC26
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC26  -     chr9:137168759-137170039 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC26  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblLRRC26 - 9q34.3 [CytoView hg19]  LRRC26 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBILRRC26 [Mapview hg19]  LRRC26 [Mapview hg38]
OMIM613505   
Gene and transcription
Genbank (Entrez)BC140911 CB160046 DN996987 DQ355157 EU588721
RefSeq transcript (Entrez)NM_001013653
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC26
Cluster EST : UnigeneHs.669977 [ NCBI ]
CGAP (NCI)Hs.669977
Alternative Splicing GalleryENSG00000184709
Gene ExpressionLRRC26 [ NCBI-GEO ]   LRRC26 [ EBI - ARRAY_EXPRESS ]   LRRC26 [ SEEK ]   LRRC26 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389816
GTEX Portal (Tissue expression)LRRC26
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2I0M4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2I0M4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2I0M4
Splice isoforms : SwissVarQ2I0M4
PhosPhoSitePlusQ2I0M4
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC26
DMDM Disease mutations389816
Blocks (Seattle)LRRC26
SuperfamilyQ2I0M4
Human Protein AtlasENSG00000184709
Peptide AtlasQ2I0M4
HPRD18397
IPIIPI00374551   IPI00973389   
Protein Interaction databases
DIP (DOE-UCLA)Q2I0M4
IntAct (EBI)Q2I0M4
FunCoupENSG00000184709
BioGRIDLRRC26
STRING (EMBL)LRRC26
ZODIACLRRC26
Ontologies - Pathways
QuickGOQ2I0M4
Ontology : AmiGOfibrillar center  protein binding  nucleolus  cytoplasm  cytoskeleton  plasma membrane  ion transport  voltage-gated potassium channel complex  potassium channel regulator activity  regulation of molecular function  extracellular exosome  
Ontology : EGO-EBIfibrillar center  protein binding  nucleolus  cytoplasm  cytoskeleton  plasma membrane  ion transport  voltage-gated potassium channel complex  potassium channel regulator activity  regulation of molecular function  extracellular exosome  
NDEx NetworkLRRC26
Atlas of Cancer Signalling NetworkLRRC26
Wikipedia pathwaysLRRC26
Orthology - Evolution
OrthoDB389816
GeneTree (enSembl)ENSG00000184709
Phylogenetic Trees/Animal Genes : TreeFamLRRC26
HOVERGENQ2I0M4
HOGENOMQ2I0M4
Homologs : HomoloGeneLRRC26
Homology/Alignments : Family Browser (UCSC)LRRC26
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC26
dbVarLRRC26
ClinVarLRRC26
1000_GenomesLRRC26 
Exome Variant ServerLRRC26
ExAC (Exome Aggregation Consortium)LRRC26 (select the gene name)
Genetic variants : HAPMAP389816
Genomic Variants (DGV)LRRC26 [DGVbeta]
DECIPHERLRRC26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC26 
Mutations
ICGC Data PortalLRRC26 
TCGA Data PortalLRRC26 
Broad Tumor PortalLRRC26
OASIS PortalLRRC26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC26
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC26
DgiDB (Drug Gene Interaction Database)LRRC26
DoCM (Curated mutations)LRRC26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC26 (select a term)
intoGenLRRC26
Cancer3DLRRC26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613505   
Orphanet
MedgenLRRC26
Genetic Testing Registry LRRC26
NextProtQ2I0M4 [Medical]
TSGene389816
GENETestsLRRC26
Target ValidationLRRC26
Huge Navigator LRRC26 [HugePedia]
snp3D : Map Gene to Disease389816
BioCentury BCIQLRRC26
ClinGenLRRC26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389816
Chemical/Pharm GKB GenePA134952867
Clinical trialLRRC26
Miscellaneous
canSAR (ICR)LRRC26 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC26
EVEXLRRC26
GoPubMedLRRC26
iHOPLRRC26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:16:30 CEST 2017

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