Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LRRC26 (leucine rich repeat containing 26)

Identity

Other namesCAPC
bA350O14.10
HGNC (Hugo) LRRC26
LocusID (NCBI) 389816
Location 9q34.3
Location_base_pair Starts at 140063212 and ends at 140064491 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LRRC26   31409
Entrez_Gene (NCBI)LRRC26  389816  leucine rich repeat containing 26
Cards
GeneCards (Weizmann)LRRC26
Ensembl (Hinxton)ENSG00000184709 [Gene_View]  chr9:140063212-140064491 [Contig_View]  LRRC26 [Vega]
AceView (NCBI)LRRC26
Genatlas (Paris)LRRC26
SOURCE (Stanford)NM_001013653
Genomic and cartography
GoldenPath (UCSC)LRRC26  -  9q34.3   chr9:140063212-140064491 -  9q34.3   [Description]    (hg19-Feb_2009)
EnsemblLRRC26 - 9q34.3 [CytoView]
Mapping of homologs : NCBILRRC26 [Mapview]
OMIM613505   
Gene and transcription
Genbank (Entrez)BC140911 CB160046 DN996987 DQ355157
RefSeq transcript (SRS)NM_001013653
RefSeq transcript (Entrez)NM_001013653
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NT_024000 NW_001839245 NW_004078061
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_024000 NW_001839245 NW_004078061
Consensus coding sequences : CCDS (NCBI)LRRC26
Cluster EST : UnigeneHs.669977 [ SRS ] Hs.669977 [ NCBI ]
CGAP (NCI)Hs.669977
Alternative Splicing : Fast-db (Paris)GSHG0031299
Alternative Splicing GalleryENSG00000184709
Gene ExpressionLRRC26 [ NCBI-GEO ]   LRRC26 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2I0M4 (SRS) Q2I0M4 (Uniprot)
NextProtQ2I0M4
With graphics : InterProQ2I0M4
Splice isoforms : SwissVarQ2I0M4(Swissvar)
Domains : Interpro (SRS)Cys-rich_flank_reg_C    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Related proteins : CluSTrQ2I0M4
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
DMDM389816
Blocks (Seattle)Q2I0M4
Human Protein AtlasENSG00000184709
HPRD18397
IPIIPI00374551   IPI00973389   
Protein Interaction databases
DIP (DOE-UCLA)Q2I0M4
IntAct (EBI)Q2I0M4
FunCoupENSG00000184709
REACTOMELRRC26
Protein Interaction Database389816
BioGRIDLRRC26
InParanoidQ2I0M4
Interologous Interaction database Q2I0M4
IntegromeDBLRRC26
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LRRC26
SNP (GeneSNP Utah)LRRC26
SNP : HGBaseLRRC26
Genetic variants : HAPMAPLRRC26
Somatic Mutations in Cancer : COSMICLRRC26 
CONAN: Copy Number AnalysisLRRC26 
Mutations and Diseases : HGMDLRRC26
OMIM613505   
GENETests613505   
Disease Genetic AssociationLRRC26
Huge Navigator LRRC26 [HugePedia]  LRRC26 [HugeCancerGEM]
Genomic VariantsLRRC26  LRRC26 [DGVbeta]
snp3D : Map Gene to Disease389816
General knowledge
Homologs : HomoloGeneLRRC26
Homology/Alignments : Family Browser (UCSC)LRRC26
Phylogenetic Trees/Animal Genes : TreeFamLRRC26
Chemical/Protein Interactions : CTD389816
Chemical/Pharm GKB GenePA134952867
Clinical trialLRRC26
Cancer Resource (Charite)ENSG00000184709
Ontology : AmiGOion channel activity  protein binding  cytoplasm  cytoskeleton  voltage-gated potassium channel complex  potassium channel regulator activity  
Ontology : EGO-EBIion channel activity  protein binding  cytoplasm  cytoskeleton  voltage-gated potassium channel complex  potassium channel regulator activity  
Other databases
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
PubGeneLRRC26
iHOPLRRC26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:27:37 CEST 2013
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