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LRRC28 (leucine rich repeat containing 28)

Identity

Alias_symbol (synonym)MGC24976
FLJ34269
FLJ45242
Other alias-
HGNC (Hugo) LRRC28
LocusID (NCBI) 123355
Atlas_Id 68605
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 99251362 and ends at 99390732 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRRC28 (15q26.3) / IQCH (15q23)ZNF461 (19q13.12) / LRRC28 (15q26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC28   28355
Cards
Entrez_Gene (NCBI)LRRC28  123355  leucine rich repeat containing 28
Aliases
GeneCards (Weizmann)LRRC28
Ensembl hg19 (Hinxton)ENSG00000168904 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168904 [Gene_View]  chr15:99251362-99390732 [Contig_View]  LRRC28 [Vega]
ICGC DataPortalENSG00000168904
TCGA cBioPortalLRRC28
AceView (NCBI)LRRC28
Genatlas (Paris)LRRC28
WikiGenes123355
SOURCE (Princeton)LRRC28
Genetics Home Reference (NIH)LRRC28
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC28  -     chr15:99251362-99390732 +  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC28  -     15q26.3   [Description]    (hg19-Feb_2009)
EnsemblLRRC28 - 15q26.3 [CytoView hg19]  LRRC28 - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBILRRC28 [Mapview hg19]  LRRC28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091588 AK127177 AK292887 AK293832 AK295161
RefSeq transcript (Entrez)NM_001284400 NM_001321675 NM_001321676 NM_001321677 NM_001321678 NM_001321679 NM_001321680 NM_144598
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC28
Cluster EST : UnigeneHs.578684 [ NCBI ]
CGAP (NCI)Hs.578684
Alternative Splicing GalleryENSG00000168904
Gene ExpressionLRRC28 [ NCBI-GEO ]   LRRC28 [ EBI - ARRAY_EXPRESS ]   LRRC28 [ SEEK ]   LRRC28 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123355
GTEX Portal (Tissue expression)LRRC28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X40
Splice isoforms : SwissVarQ86X40
PhosPhoSitePlusQ86X40
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC28
DMDM Disease mutations123355
Blocks (Seattle)LRRC28
SuperfamilyQ86X40
Human Protein AtlasENSG00000168904
Peptide AtlasQ86X40
HPRD14316
IPIIPI00329131   IPI00828008   IPI00827680   IPI00910247   IPI00910690   IPI00102993   
Protein Interaction databases
DIP (DOE-UCLA)Q86X40
IntAct (EBI)Q86X40
FunCoupENSG00000168904
BioGRIDLRRC28
STRING (EMBL)LRRC28
ZODIACLRRC28
Ontologies - Pathways
QuickGOQ86X40
Ontology : AmiGOplasma membrane  signal transduction  
Ontology : EGO-EBIplasma membrane  signal transduction  
NDEx NetworkLRRC28
Atlas of Cancer Signalling NetworkLRRC28
Wikipedia pathwaysLRRC28
Orthology - Evolution
OrthoDB123355
GeneTree (enSembl)ENSG00000168904
Phylogenetic Trees/Animal Genes : TreeFamLRRC28
HOVERGENQ86X40
HOGENOMQ86X40
Homologs : HomoloGeneLRRC28
Homology/Alignments : Family Browser (UCSC)LRRC28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC28
dbVarLRRC28
ClinVarLRRC28
1000_GenomesLRRC28 
Exome Variant ServerLRRC28
ExAC (Exome Aggregation Consortium)LRRC28 (select the gene name)
Genetic variants : HAPMAP123355
Genomic Variants (DGV)LRRC28 [DGVbeta]
DECIPHERLRRC28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC28 
Mutations
ICGC Data PortalLRRC28 
TCGA Data PortalLRRC28 
Broad Tumor PortalLRRC28
OASIS PortalLRRC28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC28
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRC28
DgiDB (Drug Gene Interaction Database)LRRC28
DoCM (Curated mutations)LRRC28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC28 (select a term)
intoGenLRRC28
Cancer3DLRRC28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC28
Genetic Testing Registry LRRC28
NextProtQ86X40 [Medical]
TSGene123355
GENETestsLRRC28
Target ValidationLRRC28
Huge Navigator LRRC28 [HugePedia]
snp3D : Map Gene to Disease123355
BioCentury BCIQLRRC28
ClinGenLRRC28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123355
Chemical/Pharm GKB GenePA134864287
Clinical trialLRRC28
Miscellaneous
canSAR (ICR)LRRC28 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC28
EVEXLRRC28
GoPubMedLRRC28
iHOPLRRC28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:28 CEST 2017

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