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LRRC29 (leucine rich repeat containing 29)

Identity

Alias_namesFBXL9
F-box and leucine-rich repeat protein 9
Alias_symbol (synonym)FBL9
Other alias
HGNC (Hugo) LRRC29
LocusID (NCBI) 26231
Atlas_Id 68606
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67207139 and ends at 67226998 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRRC29 (16q22.1) / FHOD1 (16q22.1)LRRC29 (16q22.1) / TMC5 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC29   13605
Cards
Entrez_Gene (NCBI)LRRC29  26231  leucine rich repeat containing 29
AliasesFBL9; FBXL9
GeneCards (Weizmann)LRRC29
Ensembl hg19 (Hinxton)ENSG00000125122 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125122 [Gene_View]  chr16:67207139-67226998 [Contig_View]  LRRC29 [Vega]
ICGC DataPortalENSG00000125122
TCGA cBioPortalLRRC29
AceView (NCBI)LRRC29
Genatlas (Paris)LRRC29
WikiGenes26231
SOURCE (Princeton)LRRC29
Genetics Home Reference (NIH)LRRC29
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC29  -     chr16:67207139-67226998 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC29  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC29 - 16q22.1 [CytoView hg19]  LRRC29 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBILRRC29 [Mapview hg19]  LRRC29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF176701 AK096101 AK316602 BC018785 BI085522
RefSeq transcript (Entrez)NM_001004055 NM_012163
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC29
Cluster EST : UnigeneHs.461000 [ NCBI ]
CGAP (NCI)Hs.461000
Alternative Splicing GalleryENSG00000125122
Gene ExpressionLRRC29 [ NCBI-GEO ]   LRRC29 [ EBI - ARRAY_EXPRESS ]   LRRC29 [ SEEK ]   LRRC29 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26231
GTEX Portal (Tissue expression)LRRC29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV35
Splice isoforms : SwissVarQ8WV35
PhosPhoSitePlusQ8WV35
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_Cys-con_subtyp   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam00560    pfam13516   
Domain families : Smart (EMBL)LRR_CC (SM00367)  
Conserved Domain (NCBI)LRRC29
DMDM Disease mutations26231
Blocks (Seattle)LRRC29
SuperfamilyQ8WV35
Human Protein AtlasENSG00000125122
Peptide AtlasQ8WV35
HPRD14317
IPIIPI00073186   IPI00917817   IPI00917701   IPI00917571   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV35
IntAct (EBI)Q8WV35
FunCoupENSG00000125122
BioGRIDLRRC29
STRING (EMBL)LRRC29
ZODIACLRRC29
Ontologies - Pathways
QuickGOQ8WV35
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLRRC29
Atlas of Cancer Signalling NetworkLRRC29
Wikipedia pathwaysLRRC29
Orthology - Evolution
OrthoDB26231
GeneTree (enSembl)ENSG00000125122
Phylogenetic Trees/Animal Genes : TreeFamLRRC29
HOVERGENQ8WV35
HOGENOMQ8WV35
Homologs : HomoloGeneLRRC29
Homology/Alignments : Family Browser (UCSC)LRRC29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC29
dbVarLRRC29
ClinVarLRRC29
1000_GenomesLRRC29 
Exome Variant ServerLRRC29
ExAC (Exome Aggregation Consortium)LRRC29 (select the gene name)
Genetic variants : HAPMAP26231
Genomic Variants (DGV)LRRC29 [DGVbeta]
DECIPHERLRRC29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC29 
Mutations
ICGC Data PortalLRRC29 
TCGA Data PortalLRRC29 
Broad Tumor PortalLRRC29
OASIS PortalLRRC29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC29
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC29
DgiDB (Drug Gene Interaction Database)LRRC29
DoCM (Curated mutations)LRRC29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC29 (select a term)
intoGenLRRC29
Cancer3DLRRC29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC29
Genetic Testing Registry LRRC29
NextProtQ8WV35 [Medical]
TSGene26231
GENETestsLRRC29
Target ValidationLRRC29
Huge Navigator LRRC29 [HugePedia]
snp3D : Map Gene to Disease26231
BioCentury BCIQLRRC29
ClinGenLRRC29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26231
Chemical/Pharm GKB GenePA28029
Clinical trialLRRC29
Miscellaneous
canSAR (ICR)LRRC29 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC29
EVEXLRRC29
GoPubMedLRRC29
iHOPLRRC29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:49 CEST 2017

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