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LRRC30 (leucine rich repeat containing 30)

Identity

Other alias-
HGNC (Hugo) LRRC30
LocusID (NCBI) 339291
Atlas_Id 68609
Location 18p11.23  [Link to chromosome band 18p11]
Location_base_pair Starts at 7231139 and ends at 7232044 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC30   30219
Cards
Entrez_Gene (NCBI)LRRC30  339291  leucine rich repeat containing 30
Aliases
GeneCards (Weizmann)LRRC30
Ensembl hg19 (Hinxton)ENSG00000206422 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206422 [Gene_View]  chr18:7231139-7232044 [Contig_View]  LRRC30 [Vega]
ICGC DataPortalENSG00000206422
TCGA cBioPortalLRRC30
AceView (NCBI)LRRC30
Genatlas (Paris)LRRC30
WikiGenes339291
SOURCE (Princeton)LRRC30
Genetics Home Reference (NIH)LRRC30
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC30  -     chr18:7231139-7232044 +  18p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC30  -     18p11.23   [Description]    (hg19-Feb_2009)
EnsemblLRRC30 - 18p11.23 [CytoView hg19]  LRRC30 - 18p11.23 [CytoView hg38]
Mapping of homologs : NCBILRRC30 [Mapview hg19]  LRRC30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001105581
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC30
Cluster EST : UnigeneHs.647588 [ NCBI ]
CGAP (NCI)Hs.647588
Alternative Splicing GalleryENSG00000206422
Gene ExpressionLRRC30 [ NCBI-GEO ]   LRRC30 [ EBI - ARRAY_EXPRESS ]   LRRC30 [ SEEK ]   LRRC30 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339291
GTEX Portal (Tissue expression)LRRC30
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NM36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NM36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NM36
Splice isoforms : SwissVarA6NM36
PhosPhoSitePlusA6NM36
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC30
DMDM Disease mutations339291
Blocks (Seattle)LRRC30
SuperfamilyA6NM36
Human Protein AtlasENSG00000206422
Peptide AtlasA6NM36
IPIIPI00246654   
Protein Interaction databases
DIP (DOE-UCLA)A6NM36
IntAct (EBI)A6NM36
FunCoupENSG00000206422
BioGRIDLRRC30
STRING (EMBL)LRRC30
ZODIACLRRC30
Ontologies - Pathways
QuickGOA6NM36
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC30
Atlas of Cancer Signalling NetworkLRRC30
Wikipedia pathwaysLRRC30
Orthology - Evolution
OrthoDB339291
GeneTree (enSembl)ENSG00000206422
Phylogenetic Trees/Animal Genes : TreeFamLRRC30
HOVERGENA6NM36
HOGENOMA6NM36
Homologs : HomoloGeneLRRC30
Homology/Alignments : Family Browser (UCSC)LRRC30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC30
dbVarLRRC30
ClinVarLRRC30
1000_GenomesLRRC30 
Exome Variant ServerLRRC30
ExAC (Exome Aggregation Consortium)LRRC30 (select the gene name)
Genetic variants : HAPMAP339291
Genomic Variants (DGV)LRRC30 [DGVbeta]
DECIPHERLRRC30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC30 
Mutations
ICGC Data PortalLRRC30 
TCGA Data PortalLRRC30 
Broad Tumor PortalLRRC30
OASIS PortalLRRC30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC30
BioMutasearch LRRC30
DgiDB (Drug Gene Interaction Database)LRRC30
DoCM (Curated mutations)LRRC30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC30 (select a term)
intoGenLRRC30
Cancer3DLRRC30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC30
Genetic Testing Registry LRRC30
NextProtA6NM36 [Medical]
TSGene339291
GENETestsLRRC30
Target ValidationLRRC30
Huge Navigator LRRC30 [HugePedia]
snp3D : Map Gene to Disease339291
BioCentury BCIQLRRC30
ClinGenLRRC30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339291
Chemical/Pharm GKB GenePA134945901
Clinical trialLRRC30
Miscellaneous
canSAR (ICR)LRRC30 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC30
EVEXLRRC30
GoPubMedLRRC30
iHOPLRRC30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:50 CEST 2017

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