Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LRRC31 (leucine rich repeat containing 31)

Identity

Alias_symbol (synonym)FLJ23259
Other aliasHEL-S-293
HGNC (Hugo) LRRC31
LocusID (NCBI) 79782
Atlas_Id 68610
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 169839241 and ends at 169869935 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC31   26261
Cards
Entrez_Gene (NCBI)LRRC31  79782  leucine rich repeat containing 31
AliasesHEL-S-293
GeneCards (Weizmann)LRRC31
Ensembl hg19 (Hinxton)ENSG00000114248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114248 [Gene_View]  ENSG00000114248 [Sequence]  chr3:169839241-169869935 [Contig_View]  LRRC31 [Vega]
ICGC DataPortalENSG00000114248
TCGA cBioPortalLRRC31
AceView (NCBI)LRRC31
Genatlas (Paris)LRRC31
WikiGenes79782
SOURCE (Princeton)LRRC31
Genetics Home Reference (NIH)LRRC31
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC31  -     chr3:169839241-169869935 -  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC31  -     3q26.2   [Description]    (hg19-Feb_2009)
GoldenPathLRRC31 - 3q26.2 [CytoView hg19]  LRRC31 - 3q26.2 [CytoView hg38]
ImmunoBaseENSG00000114248
genome Data Viewer NCBILRRC31 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK026912 AK097338 AY358138 BC117401 BC143569
RefSeq transcript (Entrez)NM_001277127 NM_001277128 NM_024727
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC31
Alternative Splicing GalleryENSG00000114248
Gene ExpressionLRRC31 [ NCBI-GEO ]   LRRC31 [ EBI - ARRAY_EXPRESS ]   LRRC31 [ SEEK ]   LRRC31 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC31 [ Firebrowse - Broad ]
GenevisibleExpression of LRRC31 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79782
GTEX Portal (Tissue expression)LRRC31
Human Protein AtlasENSG00000114248-LRRC31 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UY01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UY01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UY01
Splice isoforms : SwissVarQ6UY01
PhosPhoSitePlusQ6UY01
Domains : Interpro (EBI)Leu-rich_rpt    LRC31    LRR_dom_sf   
Domain families : Pfam (Sanger)LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam13516   
Conserved Domain (NCBI)LRRC31
DMDM Disease mutations79782
Blocks (Seattle)LRRC31
SuperfamilyQ6UY01
Human Protein Atlas [tissue]ENSG00000114248-LRRC31 [tissue]
Peptide AtlasQ6UY01
HPRD08023
IPIIPI00167333   IPI00015444   IPI00740652   
Protein Interaction databases
DIP (DOE-UCLA)Q6UY01
IntAct (EBI)Q6UY01
FunCoupENSG00000114248
BioGRIDLRRC31
STRING (EMBL)LRRC31
ZODIACLRRC31
Ontologies - Pathways
QuickGOQ6UY01
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC31
Atlas of Cancer Signalling NetworkLRRC31
Wikipedia pathwaysLRRC31
Orthology - Evolution
OrthoDB79782
GeneTree (enSembl)ENSG00000114248
Phylogenetic Trees/Animal Genes : TreeFamLRRC31
HOGENOMQ6UY01
Homologs : HomoloGeneLRRC31
Homology/Alignments : Family Browser (UCSC)LRRC31
Gene fusions - Rearrangements
Fusion : QuiverLRRC31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC31
dbVarLRRC31
ClinVarLRRC31
1000_GenomesLRRC31 
Exome Variant ServerLRRC31
GNOMAD BrowserENSG00000114248
Varsome BrowserLRRC31
Genetic variants : HAPMAP79782
Genomic Variants (DGV)LRRC31 [DGVbeta]
DECIPHERLRRC31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC31 
Mutations
ICGC Data PortalLRRC31 
TCGA Data PortalLRRC31 
Broad Tumor PortalLRRC31
OASIS PortalLRRC31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC31  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLRRC31
Mutations and Diseases : HGMDLRRC31
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC31
DgiDB (Drug Gene Interaction Database)LRRC31
DoCM (Curated mutations)LRRC31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC31 (select a term)
intoGenLRRC31
Cancer3DLRRC31(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRRC31
MedgenLRRC31
Genetic Testing Registry LRRC31
NextProtQ6UY01 [Medical]
TSGene79782
GENETestsLRRC31
Target ValidationLRRC31
Huge Navigator LRRC31 [HugePedia]
snp3D : Map Gene to Disease79782
BioCentury BCIQLRRC31
ClinGenLRRC31
Clinical trials, drugs, therapy
Protein Interactions : CTD79782
Pharm GKB GenePA134985943
Clinical trialLRRC31
Miscellaneous
canSAR (ICR)LRRC31 (select the gene name)
HarmonizomeLRRC31
DataMed IndexLRRC31
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC31
EVEXLRRC31
GoPubMedLRRC31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jul 10 20:20:59 CEST 2020

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