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LRRC32 (leucine rich repeat containing 32)

Identity

Alias_namesD11S833E
GARP
glycoprotein A repetitions predominant
Other alias
HGNC (Hugo) LRRC32
LocusID (NCBI) 2615
Atlas_Id 55825
Location 11q13.5  [Link to chromosome band 11q13]
Location_base_pair Starts at 76657524 and ends at 76670747 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPLP2 (11p15.5) / LRRC32 (11q13.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC32   4161
Cards
Entrez_Gene (NCBI)LRRC32  2615  leucine rich repeat containing 32
AliasesD11S833E; GARP
GeneCards (Weizmann)LRRC32
Ensembl hg19 (Hinxton)ENSG00000137507 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137507 [Gene_View]  chr11:76657524-76670747 [Contig_View]  LRRC32 [Vega]
ICGC DataPortalENSG00000137507
TCGA cBioPortalLRRC32
AceView (NCBI)LRRC32
Genatlas (Paris)LRRC32
WikiGenes2615
SOURCE (Princeton)LRRC32
Genetics Home Reference (NIH)LRRC32
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC32  -     chr11:76657524-76670747 -  11q13.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC32  -     11q13.5   [Description]    (hg19-Feb_2009)
EnsemblLRRC32 - 11q13.5 [CytoView hg19]  LRRC32 - 11q13.5 [CytoView hg38]
Mapping of homologs : NCBILRRC32 [Mapview hg19]  LRRC32 [Mapview hg38]
OMIM137207   
Gene and transcription
Genbank (Entrez)AK314971 BC052210 BC070079 BI010671 CA775494
RefSeq transcript (Entrez)NM_001128922 NM_005512
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC32
Cluster EST : UnigeneHs.151641 [ NCBI ]
CGAP (NCI)Hs.151641
Alternative Splicing GalleryENSG00000137507
Gene ExpressionLRRC32 [ NCBI-GEO ]   LRRC32 [ EBI - ARRAY_EXPRESS ]   LRRC32 [ SEEK ]   LRRC32 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2615
GTEX Portal (Tissue expression)LRRC32
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14392   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14392  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14392
Splice isoforms : SwissVarQ14392
PhosPhoSitePlusQ14392
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_8 (PF13855)    LRRNT (PF01462)   
Domain families : Pfam (NCBI)pfam13855    pfam01462   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRNT (SM00013)  
Conserved Domain (NCBI)LRRC32
DMDM Disease mutations2615
Blocks (Seattle)LRRC32
SuperfamilyQ14392
Human Protein AtlasENSG00000137507
Peptide AtlasQ14392
HPRD00667
IPIIPI00030280   IPI00794430   
Protein Interaction databases
DIP (DOE-UCLA)Q14392
IntAct (EBI)Q14392
FunCoupENSG00000137507
BioGRIDLRRC32
STRING (EMBL)LRRC32
ZODIACLRRC32
Ontologies - Pathways
QuickGOQ14392
Ontology : AmiGOintegral component of plasma membrane  positive regulation of gene expression  negative regulation of activated T cell proliferation  negative regulation of cytokine secretion  
Ontology : EGO-EBIintegral component of plasma membrane  positive regulation of gene expression  negative regulation of activated T cell proliferation  negative regulation of cytokine secretion  
NDEx NetworkLRRC32
Atlas of Cancer Signalling NetworkLRRC32
Wikipedia pathwaysLRRC32
Orthology - Evolution
OrthoDB2615
GeneTree (enSembl)ENSG00000137507
Phylogenetic Trees/Animal Genes : TreeFamLRRC32
HOVERGENQ14392
HOGENOMQ14392
Homologs : HomoloGeneLRRC32
Homology/Alignments : Family Browser (UCSC)LRRC32
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC32
dbVarLRRC32
ClinVarLRRC32
1000_GenomesLRRC32 
Exome Variant ServerLRRC32
ExAC (Exome Aggregation Consortium)LRRC32 (select the gene name)
Genetic variants : HAPMAP2615
Genomic Variants (DGV)LRRC32 [DGVbeta]
DECIPHERLRRC32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC32 
Mutations
ICGC Data PortalLRRC32 
TCGA Data PortalLRRC32 
Broad Tumor PortalLRRC32
OASIS PortalLRRC32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC32
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC32
DgiDB (Drug Gene Interaction Database)LRRC32
DoCM (Curated mutations)LRRC32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC32 (select a term)
intoGenLRRC32
Cancer3DLRRC32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM137207   
Orphanet
MedgenLRRC32
Genetic Testing Registry LRRC32
NextProtQ14392 [Medical]
TSGene2615
GENETestsLRRC32
Target ValidationLRRC32
Huge Navigator LRRC32 [HugePedia]
snp3D : Map Gene to Disease2615
BioCentury BCIQLRRC32
ClinGenLRRC32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2615
Chemical/Pharm GKB GenePA28574
Clinical trialLRRC32
Miscellaneous
canSAR (ICR)LRRC32 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC32
EVEXLRRC32
GoPubMedLRRC32
iHOPLRRC32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:16:30 CEST 2017

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