Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LRRC34 (leucine rich repeat containing 34)

Identity

Alias_symbol (synonym)MGC27085
Other alias-
HGNC (Hugo) LRRC34
LocusID (NCBI) 151827
Atlas_Id 68612
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 169793428 and ends at 169812786 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EPB41L3 (18p11.31) / LRRC34 (3q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC34   28408
Cards
Entrez_Gene (NCBI)LRRC34  151827  leucine rich repeat containing 34
Aliases
GeneCards (Weizmann)LRRC34
Ensembl hg19 (Hinxton)ENSG00000171757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171757 [Gene_View]  chr3:169793428-169812786 [Contig_View]  LRRC34 [Vega]
ICGC DataPortalENSG00000171757
TCGA cBioPortalLRRC34
AceView (NCBI)LRRC34
Genatlas (Paris)LRRC34
WikiGenes151827
SOURCE (Princeton)LRRC34
Genetics Home Reference (NIH)LRRC34
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC34  -     chr3:169793428-169812786 -  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC34  -     3q26.2   [Description]    (hg19-Feb_2009)
EnsemblLRRC34 - 3q26.2 [CytoView hg19]  LRRC34 - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBILRRC34 [Mapview hg19]  LRRC34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095125 AK130856 AK293661 AK295065 AK302466
RefSeq transcript (Entrez)NM_001172779 NM_001172780 NM_153353
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC34
Cluster EST : UnigeneHs.591289 [ NCBI ]
CGAP (NCI)Hs.591289
Alternative Splicing GalleryENSG00000171757
Gene ExpressionLRRC34 [ NCBI-GEO ]   LRRC34 [ EBI - ARRAY_EXPRESS ]   LRRC34 [ SEEK ]   LRRC34 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151827
GTEX Portal (Tissue expression)LRRC34
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ02
Splice isoforms : SwissVarQ8IZ02
PhosPhoSitePlusQ8IZ02
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam13516   
Conserved Domain (NCBI)LRRC34
DMDM Disease mutations151827
Blocks (Seattle)LRRC34
SuperfamilyQ8IZ02
Human Protein AtlasENSG00000171757
Peptide AtlasQ8IZ02
HPRD14519
IPIIPI00217826   IPI00796673   IPI00982226   IPI00791798   IPI00983547   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ02
IntAct (EBI)Q8IZ02
FunCoupENSG00000171757
BioGRIDLRRC34
STRING (EMBL)LRRC34
ZODIACLRRC34
Ontologies - Pathways
QuickGOQ8IZ02
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkLRRC34
Atlas of Cancer Signalling NetworkLRRC34
Wikipedia pathwaysLRRC34
Orthology - Evolution
OrthoDB151827
GeneTree (enSembl)ENSG00000171757
Phylogenetic Trees/Animal Genes : TreeFamLRRC34
HOVERGENQ8IZ02
HOGENOMQ8IZ02
Homologs : HomoloGeneLRRC34
Homology/Alignments : Family Browser (UCSC)LRRC34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC34
dbVarLRRC34
ClinVarLRRC34
1000_GenomesLRRC34 
Exome Variant ServerLRRC34
ExAC (Exome Aggregation Consortium)LRRC34 (select the gene name)
Genetic variants : HAPMAP151827
Genomic Variants (DGV)LRRC34 [DGVbeta]
DECIPHERLRRC34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC34 
Mutations
ICGC Data PortalLRRC34 
TCGA Data PortalLRRC34 
Broad Tumor PortalLRRC34
OASIS PortalLRRC34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC34
BioMutasearch LRRC34
DgiDB (Drug Gene Interaction Database)LRRC34
DoCM (Curated mutations)LRRC34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC34 (select a term)
intoGenLRRC34
Cancer3DLRRC34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC34
Genetic Testing Registry LRRC34
NextProtQ8IZ02 [Medical]
TSGene151827
GENETestsLRRC34
Target ValidationLRRC34
Huge Navigator LRRC34 [HugePedia]
snp3D : Map Gene to Disease151827
BioCentury BCIQLRRC34
ClinGenLRRC34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151827
Chemical/Pharm GKB GenePA142671522
Clinical trialLRRC34
Miscellaneous
canSAR (ICR)LRRC34 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC34
EVEXLRRC34
GoPubMedLRRC34
iHOPLRRC34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:24:50 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.