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LRRC36 (leucine rich repeat containing 36)

Identity

Alias_symbol (synonym)FLJ11004
Other aliasRORBP70
XLHSRF2
HGNC (Hugo) LRRC36
LocusID (NCBI) 55282
Atlas_Id 68613
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67347355 and ends at 67385206 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM65A (16q22.1) / LRRC36 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC36   25615
Cards
Entrez_Gene (NCBI)LRRC36  55282  leucine rich repeat containing 36
AliasesRORBP70; XLHSRF2
GeneCards (Weizmann)LRRC36
Ensembl hg19 (Hinxton)ENSG00000159708 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159708 [Gene_View]  chr16:67347355-67385206 [Contig_View]  LRRC36 [Vega]
ICGC DataPortalENSG00000159708
TCGA cBioPortalLRRC36
AceView (NCBI)LRRC36
Genatlas (Paris)LRRC36
WikiGenes55282
SOURCE (Princeton)LRRC36
Genetics Home Reference (NIH)LRRC36
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC36  -     chr16:67347355-67385206 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC36  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC36 - 16q22.1 [CytoView hg19]  LRRC36 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBILRRC36 [Mapview hg19]  LRRC36 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001866 AK292311 AK297329 AK301766 AK309897
RefSeq transcript (Entrez)NM_001161575 NM_018296
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC36
Cluster EST : UnigeneHs.125139 [ NCBI ]
CGAP (NCI)Hs.125139
Alternative Splicing GalleryENSG00000159708
Gene ExpressionLRRC36 [ NCBI-GEO ]   LRRC36 [ EBI - ARRAY_EXPRESS ]   LRRC36 [ SEEK ]   LRRC36 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55282
GTEX Portal (Tissue expression)LRRC36
Human Protein AtlasENSG00000159708-LRRC36 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1X8D7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1X8D7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1X8D7
Splice isoforms : SwissVarQ1X8D7
PhosPhoSitePlusQ1X8D7
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC36
DMDM Disease mutations55282
Blocks (Seattle)LRRC36
SuperfamilyQ1X8D7
Human Protein Atlas [tissue]ENSG00000159708-LRRC36 [tissue]
Peptide AtlasQ1X8D7
HPRD08558
IPIIPI00376193   IPI00644945   IPI00922907   IPI00922777   IPI00332377   
Protein Interaction databases
DIP (DOE-UCLA)Q1X8D7
IntAct (EBI)Q1X8D7
FunCoupENSG00000159708
BioGRIDLRRC36
STRING (EMBL)LRRC36
ZODIACLRRC36
Ontologies - Pathways
QuickGOQ1X8D7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC36
Atlas of Cancer Signalling NetworkLRRC36
Wikipedia pathwaysLRRC36
Orthology - Evolution
OrthoDB55282
GeneTree (enSembl)ENSG00000159708
Phylogenetic Trees/Animal Genes : TreeFamLRRC36
HOVERGENQ1X8D7
HOGENOMQ1X8D7
Homologs : HomoloGeneLRRC36
Homology/Alignments : Family Browser (UCSC)LRRC36
Gene fusions - Rearrangements
Tumor Fusion PortalLRRC36
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC36
dbVarLRRC36
ClinVarLRRC36
1000_GenomesLRRC36 
Exome Variant ServerLRRC36
ExAC (Exome Aggregation Consortium)ENSG00000159708
GNOMAD BrowserENSG00000159708
Genetic variants : HAPMAP55282
Genomic Variants (DGV)LRRC36 [DGVbeta]
DECIPHERLRRC36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC36 
Mutations
ICGC Data PortalLRRC36 
TCGA Data PortalLRRC36 
Broad Tumor PortalLRRC36
OASIS PortalLRRC36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC36
BioMutasearch LRRC36
DgiDB (Drug Gene Interaction Database)LRRC36
DoCM (Curated mutations)LRRC36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC36 (select a term)
intoGenLRRC36
Cancer3DLRRC36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRRC36
MedgenLRRC36
Genetic Testing Registry LRRC36
NextProtQ1X8D7 [Medical]
TSGene55282
GENETestsLRRC36
Target ValidationLRRC36
Huge Navigator LRRC36 [HugePedia]
snp3D : Map Gene to Disease55282
BioCentury BCIQLRRC36
ClinGenLRRC36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55282
Chemical/Pharm GKB GenePA142671524
Clinical trialLRRC36
Miscellaneous
canSAR (ICR)LRRC36 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC36
EVEXLRRC36
GoPubMedLRRC36
iHOPLRRC36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:33:38 CET 2017

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