Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LRRC37A (leucine rich repeat containing 37A)

Identity

Alias_symbol (synonym)KIAA0563
Other alias-
HGNC (Hugo) -
LocusID (NCBI) 9884
Atlas_Id 68614
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43627371 and ends at 43664137 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LRRC37A  9884  leucine rich repeat containing 37A
Aliases
GeneCards (Weizmann)LRRC37A
Ensembl hg19 (Hinxton) [Gene_View]  chr17:43627371-43664137 [Contig_View]  LRRC37A [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:43627371-43664137 [Contig_View]  LRRC37A [Vega]
TCGA cBioPortalLRRC37A
AceView (NCBI)LRRC37A
Genatlas (Paris)LRRC37A
WikiGenes9884
SOURCE (Princeton)LRRC37A
Genetics Home Reference (NIH)LRRC37A
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC37A  -     chr17:43627371-43664137 -  17q21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC37A  -     17q21.31   [Description]    (hg38-Dec_2013)
EnsemblLRRC37A - 17q21.31 [CytoView hg19]  LRRC37A - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBILRRC37A [Mapview hg19]  LRRC37A [Mapview hg38]
Gene and transcription
Genbank (Entrez)JQ358763
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NT_010783 NT_167251 NT_187663
Consensus coding sequences : CCDS (NCBI)LRRC37A
Cluster EST : UnigeneHs.741051 [ NCBI ]
CGAP (NCI)Hs.741051
Gene ExpressionLRRC37A [ NCBI-GEO ]   LRRC37A [ EBI - ARRAY_EXPRESS ]   LRRC37A [ SEEK ]   LRRC37A [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC37A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9884
GTEX Portal (Tissue expression)LRRC37A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMS7
Splice isoforms : SwissVarA6NMS7
PhosPhoSitePlusA6NMS7
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRC37A/B_like    LRRC37AB_C   
Domain families : Pfam (Sanger)LRR_8 (PF13855)    LRRC37AB_C (PF14914)   
Domain families : Pfam (NCBI)pfam13855    pfam14914   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC37A
DMDM Disease mutations9884
Blocks (Seattle)LRRC37A
SuperfamilyA6NMS7
Peptide AtlasA6NMS7
Protein Interaction databases
DIP (DOE-UCLA)A6NMS7
IntAct (EBI)A6NMS7
BioGRIDLRRC37A
STRING (EMBL)LRRC37A
ZODIACLRRC37A
Ontologies - Pathways
QuickGOA6NMS7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC37A
Atlas of Cancer Signalling NetworkLRRC37A
Wikipedia pathwaysLRRC37A
Orthology - Evolution
OrthoDB9884
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENA6NMS7
HOGENOMA6NMS7
Homologs : HomoloGeneLRRC37A
Homology/Alignments : Family Browser (UCSC)LRRC37A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC37A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC37A
dbVarLRRC37A
ClinVarLRRC37A
1000_GenomesLRRC37A 
Exome Variant ServerLRRC37A
ExAC (Exome Aggregation Consortium)LRRC37A (select the gene name)
Genetic variants : HAPMAP9884
Genomic Variants (DGV)LRRC37A [DGVbeta]
DECIPHER (Syndromes)17:43627371-43664137  
CONAN: Copy Number AnalysisLRRC37A 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC37A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC37A
DgiDB (Drug Gene Interaction Database)LRRC37A
DoCM (Curated mutations)LRRC37A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC37A (select a term)
intoGenLRRC37A
Cancer3DLRRC37A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC37A
Genetic Testing Registry LRRC37A
NextProtA6NMS7 [Medical]
TSGene9884
GENETestsLRRC37A
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease9884
BioCentury BCIQLRRC37A
ClinGenLRRC37A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9884
Clinical trialLRRC37A
Miscellaneous
canSAR (ICR)LRRC37A (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC37A
EVEXLRRC37A
GoPubMedLRRC37A
iHOPLRRC37A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:04 CET 2017

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